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This is a UCSC Genome Browser Mirror hosted by the Genetics and Genomics Analysis Platform About GenAP - GenAP Pipelines - GenAP public Galaxy - Epigenomes IHEC Data Portal |
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This page contains track and table release information for the following genome assemblies:
For older log entries, please see this page.
Last updated 14 Apr 2018. Inquiries and feedback welcome.
Track Name | Assembly |
---|---|
NCBI RefSeq gene predictions | hg19 hg38 ce11 sacCer3 danRer10 danRer11 dm6 xenTro7 xenTro9 rn6 |
Initial petMar3 release (using University of Kentucky Pmar_germline 1.0 (NCBI project 357048, GCA_002833325.1): AUGUSTUS, Assembly, Chromosome Band (Ideogram), CpG Islands, GC Percent, Gap, Genscan Genes, Human Chain and Net, INSDC, Interrupted Rpts, Lamprey Chain/Net, Microsatellite, Mouse Chain and Net, RefSeq Acc, RepeatMasker, Simple Repeats, Unmasked CpG, WM + SDust. | petMar3 |
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. | ailMel1 allMis1 anoCar2 balAcu1 bosTau8 calJac3 calMil1 canFam3 cavPor3 ce11 cerSim1 chlSab2 danRer7 dasNov3 dm6 droPer1 echTel2 eriEur2 felCat5 felCat8 fr3 galGal4 galVar1 geoFor1 hetGla2 latCha1 macFas5 melGal5 melUnd1 myoLuc2 oreNil2 otoGar3 oviAri3 panPan1 panTro4 panTro5 papAnu2 rheMac8 sarHar1 sorAra2 speTri2 susScr3 taeGut2 tarSyr2 triMan1 xenTro7 |
UCSC to RefSeq Chromosome names | ailMel1 allMis1 anoCar2 balAcu1 bosTau8 calJac3 calMil1 canFam3 cavPor3 ce11 cerSim1 chlSab2 danRer7 danRer10 dasNov3 dm6 droPer1 echTel2 eriEur2 felCat5 felCat8 fr3 galGal4 galVar1 geoFor1 hetGla2 hg38 latCha1 melUnd1 micMur2 myoLuc2 oreNil2 otoGar3 oviAri3 panPan1 panTro4 papAnu2 rheMac8 sarHar1 sorAra2 speTri2 susScr3 taeGut2 tarSyr2 triMan1 xenTro7 |
Human Gene Mutation Database Public Variants (HGMD) | hg19 hg38 |
Crispr Targets 10K | mm10 |
Ensembl v91 release | ailMel1 anoCar2 bosTau6 calJac3 canFam3 cavPor3 ce11 chlSab2 choHof1 criGriChoV1 danRer10 dasNov3 dm6 echTel1 equCab2 eriEur1 felCat8 fr2 gadMor1 galGal5 gasAcu1 gorGor4 hetGla1 hetGla2 latCha1 loxAfr3 macFas5 melGal1 monDom5 musFur1 myoLuc2 nomLeu3 ochPri2 ornAna1 ornAna2 oryCun2 oryLat2 otoGar3 oviAri3 panTro5 petMar2 ponAbe2 proCap1 pteVam1 rheMac8 rhiRox1 rn6 sacCer3 saiBol1 sarHar1 sorAra1 speTri2 susScr11 taeGut1 tarSyr2 tetNig2 tupBel1 vicPac1 xenTro3 |
Ensembl v90 release | felCat5 gorGor3 micMur2 nomLeu1 panTro4 papAnu2 tarSyr1 |
Newest MalaCards Links (hg38 & hg19) | hg19 hg38 |
Mammal 30-way Conservation (27 primates) | hg38 |
Track Name |
---|
NCBI RefSeq gene predictions |
UCSC to RefSeq Chromosome names |
Human Gene Mutation Database Public Variants (HGMD) |
Newest MalaCards Links (hg38 & hg19) |
Mammal 30-way Conservation (27 primates) |
Hoffman Lab Umap and Bismap Mappability for human |
NCBI RefSeq Functional Elements for human (hg38) and mouse (mm10) |
X. tropicalis (xenTro9) Chain and Net |
Transcript and Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
Uniprot proteins |
GENCODE V27 release |
GTEx Transcript Expression |
COSMIC: Catalogue Of Somatic Mutations In Cancer v82. |
GRCh38 patch release 11, alternate sequences and reference sequence patches |
Common SNPs(150), Flagged SNPs(150), Mult. SNPs(150), All SNPS(150) initial release |
COSMIC: Catalogue Of Somatic Mutations In Cancer v81. |
All GENCODE V26 release |
Gene interactions and pathways from curated databases and text-mining |
Human (hg38) and Horse (equCab2) Chain/Nets |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
RefSeq gene predictions from NCBI |
GRCh38 patch release 9, alternate sequences and reference sequence patches |
Track Name |
---|
NCBI RefSeq gene predictions |
Human Gene Mutation Database Public Variants (HGMD) |
Newest MalaCards Links (hg38 & hg19) |
GTEx Combined eQTL |
GTEx Tissue eQTL |
GENCODE V27lift37 release, mapped from GRCh38/hg38 to GRCh37/hg19 |
Uniprot proteins |
GTEx Transcript Expression |
COSMIC: Catalogue Of Somatic Mutations In Cancer v82. |
Common SNPs(150), Flagged SNPs(150), Mult. SNPs(150), All SNPS(150) initial release |
COSMIC: Catalogue Of Somatic Mutations In Cancer v81. |
Gene interactions and pathways from curated databases and text-mining |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Pfam in UCSC Genes (update) |
Track Name |
---|
Crispr Targets 10K |
GENCODE Mouse release VM16 |
NCBI RefSeq Functional Elements for human (hg38) and mouse (mm10) |
X. tropicalis (xenTro9) Chain and Net |
NCBI RefSeq gene predictions |
Uniprot proteins |
Mouse SNPs |
GENCODE VM14 Release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v90 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
NCBI RefSeq gene predictions |
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
Uniprot proteins |
Track Name |
---|
Uniprot proteins |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v90 release |
Track Name |
---|
Ensembl v91 release |
X. tropicalis (xenTro9) Chain and Net |
Ensembl v89 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
All SNPs(147), Mult SNPs(147) Initial Release |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v90 release |
Track Name |
---|
Crispr track for criGri1 |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
NCBI RefSeq gene predictions |
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
Uniprot proteins |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
X. tropicalis (xenTro9) Chain and Net |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
X. tropicalis (xenTro9) Chain and Net |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v90 release |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v90 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Ensembl genes v86 for Green Monkey (chlSab2) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v91 release |
Human (hg38) and Horse (equCab2) Chain/Nets |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
X. tropicalis (xenTro9) Chain and Net |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Track Name |
---|
UCSC to RefSeq Chromosome names |
Ensembl v90 release |
Ensembl v89 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
X. tropicalis (xenTro9) Chain and Net |
Ensembl v89 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v91 release |
Ensembl v89 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
Ensembl v89 release |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
NCBI RefSeq gene predictions |
Ensembl v91 release |
Uniprot proteins |
Ensembl v89 release |
Mouse SNPs |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Vertebrate 20-way Conservation |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
NCBI RefSeq gene predictions |
Ensembl v91 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v90 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
NCBI RefSeq gene predictions |
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Track Name |
---|
Ensembl v91 release |
Track Name |
---|
NCBI RefSeq gene predictions |
UCSC to RefSeq Chromosome names |
Ensembl v91 release |
Uniprot proteins |
Ensembl v89 release |
TransMap Alignments (Ensembl, RefSeq, GenBank RNAs, and GenBank ESTs) |
Rat (rn6) Chain/Nets |
Track Name |
---|
Search support for chromosome aliases from Ensembl, GenBank, and RefSeq. |
UCSC to RefSeq Chromosome names |