Merged Cells Track Settings
 
Single cell RNA expression levels cell types from many organs   (All Single Cell RNA-seq tracks)

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Label: Name or ID of item    Alternative name for item   
Log10(x+1) transform:    View limits maximum: ppm/cell (range 0-10000)

color source and cell type count organ cell_class stage cell_type
   
Blood B cell 13800 blood immune adult B cell
   
Blood T cell CD4+ 41001 blood immune adult T cell CD4+
   
Blood T cell CD8+ 25469 blood immune adult T cell CD8+
   
Blood dendritic cell 3589 blood immune adult dendritic cell
   
Blood monocyte 49010 blood immune adult monocyte
   
Blood natural killer cell 18664 blood immune adult natural killer cell
   
Blood other 3442 blood immune adult other
   
Blood T cell other 6789 blood immune adult T cell other
   
Brain astrocyte (fibrous) 4562 brain glia adult astrocytes (fibrous)
   
Brain astrocyte (protoplasmic) 7655 brain glia adult astrocytes (protoplasmic)
   
Brain endothelial cell 2668 brain endothelial adult endothelial cell
   
Brain interneuron PVALB+ 4037 brain neural adult interneuron PVALB+
   
Brain interneuron SST+ 4569 brain neural adult interneuron SST+
   
Brain interneuron SV2C+ 1914 brain neural adult interneuron SV2C+
   
Brain interneuron VIP+ 5974 brain neural adult interneuron VIP+
   
Brain neuron L2/3 cortex 13324 brain neural adult neuron L2/3 cortex
   
Brain neuron L4 cortex 6858 brain neural adult neuron L4 cortex
   
Brain neuron L5/6 corticofugal 3561 brain neural adult neuron L5/6 corticofugal
   
Brain neuron L5/6 cortico-cortical 4617 brain neural adult neuron L5/6 cortico-cortical
   
Brain microglia 3331 brain immune adult microglia
   
Brain neuron NRGN+ I 3543 brain neural adult neuron NRGN+ I
   
Brain neuron NRGN+ II 8317 brain neural adult neuron NRGN+ II
   
Brain neuron maturing 4135 brain neural adult neuron maturing
   
Brain oligodendrocyte precursor 10123 brain precursor adult oligodendrocyte precursor
   
Brain oligodendrocyte 15371 brain glia adult oligodendrocyte
   
Colon enteroendocrine cell 13 colon secretory adult enteroendocrine cell
   
Colon enterocyte 870 colon epithelial adult enterocyte
   
Colon goblet cell 765 colon secretory adult goblet cell
   
Colon Paneth-like cell 349 colon secretory adult Paneth-like cell
   
Colon enteric progenitor 1784 colon precursor adult enteric progenitor
   
Colon enteric stem cell 131 colon stem cell adult enteric stem cell
   
Colon transit amplifying cell 417 colon precursor adult transit amplifying cell
   
Fetal mixed AFP+ ALB+ cell 182 mixed other fetal mixed AFP+ ALB+ cell
   
Fetal pancreas acinar cell 11388 pancreas secretory fetal acinar cell
   
Fetal adrenal gland adrenocortical cell 328920 adrenal gland secretory fetal adrenocortical cell
   
Fetal eye amacrine cell 7341 eye neural fetal amacrine cell
   
Fetal thymus antigen presenting cell 465 thymus immune fetal antigen presenting cell
   
Fetal brain astrocyte 318105 brain glia fetal astrocyte
   
Fetal eye bipolar neuron 1207 eye neural fetal bipolar neuron
   
Fetal lung bronchiolar/alveolar epith... 101249 lung epithelial fetal bronchiolar/alveolar epithelial cell
   
Fetal pancreas CCL19+ CCL21+ cell 206 pancreas other fetal pancreas CCL19+ CCL21+ cell
   
Fetal heart CLC+ IL5RA+ cell 102 heart other fetal heart CLC+ IL5RA+ cell
   
Fetal mixed CSH1+ CSH2+ cell 109 mixed other fetal mixed CSH1+ CSH2+ cell
   
Fetal heart cardiomyocyte 67610 heart muscle fetal cardiomyocyte
   
Fetal adrenal gland chromaffin cell 21055 adrenal gland secretory fetal chromaffin cell
   
Fetal mixed ciliated epithelial cell 2886 mixed ciliated fetal ciliated epithelial cell
   
Fetal eye corneal/conjunctival epithe... 104 eye epithelial fetal corneal/conjunctival epithelial cell
   
Fetal pancreas ductal cell 4829 pancreas secretory fetal ductal cell
   
Fetal heart ELF3+ AGBL2+ cell 164 heart other fetal heart ELF3+ AGBL2+ cell
   
Fetal mixed ENS glial cell 3219 mixed glia fetal enteric nervous system (ENS) glial cell
   
Fetal mixed ENS neuron 2514 mixed neural fetal enteric nervous system (ENS) neuron
   
Fetal heart endocardial cell 7398 heart endothelial fetal endocardial cell
   
Fetal heart epicardial adipose cell 1891 heart adipose fetal epicardial adipose cell
   
Fetal mixed erythroblast 46707 mixed immune fetal erythroblast
   
Fetal brain excitatory neuron 1258818 brain neural fetal excitatory neuron
   
Fetal placenta extravillous trophoblast 1535 placenta trophoblast fetal extravillous trophoblast
   
Fetal eye ganglion cell 10143 eye neural fetal ganglion cell
   
Fetal stomach goblet cell 3624 stomach secretory fetal goblet cell
   
Fetal brain granule neuron 312675 brain neural fetal granule neuron
   
Fetal liver hematopoietic stem cell 1096 liver stem cell fetal hematopoietic stem cell
   
Fetal liver hepatoblast 58447 liver hepatocyte fetal hepatoblast
   
Fetal eye horizontal cell 2300 eye neural fetal horizontal cell
   
Fetal placenta IGFBP1+ DKK1+ cell 701 placenta other fetal placenta IGFBP1+ DKK1+ cell
   
Fetal brain inhibitory interneuron 129890 brain neural fetal inhibitory interneuron
   
Fetal brain inhibitory neuron 350759 brain neural fetal inhibitory neuron
   
Fetal intestine epithelial cell 24545 intestine epithelial fetal intestinal epithelial cell
   
Fetal pancreas islet endocrine cell 4768 pancreas secretory fetal islet endocrine cell
   
Fetal eye lens fibre cell 246 eye other fetal lens fibre cell
   
Fetal brain limbic system neuron 45989 brain neural fetal limbic system neuron
   
Fetal mixed lymphatic endothelial cell 7305 mixed endothelial fetal lymphatic endothelial cell
   
Fetal mixed lymphoid cell 16873 mixed immune fetal lymphoid cell
   
Fetal stomach MUC13+ DMBT1+ cell 792 stomach other fetal stomach MUC13+ DMBT1+ cell
   
Fetal mixed megakaryocyte 3498 mixed immune fetal megakaryocyte
   
Fetal kidney mesangial cell 44177 kidney kidney specific fetal mesangial cell
   
Fetal mixed mesothelial cell 2048 mixed epithelial fetal mesothelial cell
   
Fetal kidney metanephric cell 90876 kidney kidney specific fetal metanephric cell
   
Fetal brain microglial cell 8975 brain immune fetal microglial cell
   
Fetal mixed myeloid cell 18300 mixed immune fetal myeloid cell
   
Fetal mixed neuroendocrine cell 1824 mixed secretory fetal neuroendocrine cell
   
Fetal brain oligodendrocyte 33748 brain glia fetal oligodendrocyte
   
Fetal placenta PAEP+ MECOM+ cell 287 placenta other fetal placenta PAEP+ MECOM+ cell
   
Fetal eye PDE11A+ FAM19A2+ cell 806 eye other fetal eye PDE11A+ FAM19A2+ cell
   
Fetal stomach PDE1C+ ACSM3+ cell 78 stomach other fetal stomach PDE1C+ ACSM3+ cell
   
Fetal stomach parietal and chief cell 2322 stomach secretory fetal parietal and chief cell
   
Fetal eye photoreceptor cell 12398 eye neural fetal photoreceptor cell
   
Fetal brain Purkinje neuron 280377 brain neural fetal Purkinje neuron
   
Fetal brain retinal pigment cell 704 brain other fetal retinal pigment cell
   
Fetal brain retinal progenitor/Muller... 14865 brain glia fetal retinal progenitor/Muller glial cell
   
Fetal heart SATB2+ LRRC7+ cell 318 heart other fetal heart SATB2+ LRRC7+ cell
   
Fetal brain SKOR2+ NPSR1+ cell 15005 brain other fetal brain SKOR2+ NPSR1+ cell
   
Fetal brain SLC24A4+ PEX5L+ cell 19722 brain other fetal brain SLC24A4+ PEX5L+ cell
   
Fetal adrenal gland SLC26A4+ PAEP+ cell 68 adrenal gland other fetal adrenal gland SLC26A4+ PAEP+ cell
   
Fetal spleen STC2+ TLX1+ cell 4487 spleen other fetal spleen STC2+ TLX1+ cell
   
Fetal muscle satellite cell 5255 muscle precursor fetal satellite cell
   
Fetal mixed Schwann cell 1769 mixed glia fetal Schwann cell
   
Fetal muscle skeletal muscle cell 13516 muscle muscle fetal skeletal muscle cell
   
Fetal mixed smooth muscle cell 7344 mixed muscle fetal smooth muscle cell
   
Fetal mixed squamous epithelial cell 2238 mixed epithelial fetal squamous epithelial cell
   
Fetal liver stellate cell 1743 liver fibroblast fetal stellate cell
   
Fetal mixed stromal cell 152957 mixed other fetal stromal cell
   
Fetal adrenal gland sympathoblasts 3805 adrenal gland other fetal sympathoblasts
   
Fetal placenta syncytiotrophoblast an... 14567 placenta trophoblast fetal syncytiotrophoblast and villous cytot...
   
Fetal thymus thymic epithelial cell 259 thymus epithelial fetal thymic epithelial cell
   
Fetal thymus thymocyte 7852 thymus other fetal thymocyte
   
Fetal placenta trophoblast giant cell 1137 placenta trophoblast fetal trophoblast giant cell
   
Fetal brain unipolar brush cell 52646 brain neural fetal unipolar brush cell
   
Fetal kidney ureteric bud cell 9138 kidney other fetal ureteric bud cell
   
Fetal mixed vascular endothelial cell 75104 mixed endothelial fetal vascular endothelial cell
   
Fetal mixed visceral neuron 610 mixed neural fetal visceral neuron
   
Heart adipocyte 3799 heart adipose adult adipocyte
   
Heart atrial cardiomyocyte 23483 heart muscle adult atrial cardiomyocyte
   
Heart endothelial cell 100579 heart endothelial adult endothelial cell
   
Heart fibroblast 59341 heart fibroblast adult fibroblast
   
Heart lymphoid cell 17217 heart immune adult lymphoid cell
   
Heart mesothelial cell 718 heart epithelial adult mesothelial cell
   
Heart myeloid cell 23028 heart immune adult myeloid cell
   
Heart neuronal cell 3961 heart neural adult neuronal cell
   
Heart not assigned 33998 heart other adult not assigned
   
Heart pericyte 77856 heart endothelial adult pericyte
   
Heart smooth muscle 16242 heart muscle adult smooth muscle
   
Heart ventricular cardiomyocyte 125289 heart muscle adult ventricular cardiomyocyte
   
Heart doublets 623 heart other adult doublets
   
Ileum enteroendocrine cell 38 ileum secretory adult enteroendocrine cell
   
Ileum enterocyte 4243 ileum epithelial adult enterocyte
   
Ileum goblet cell 303 ileum secretory adult goblet cell
   
Ileum Paneth-like cell 94 ileum secretory adult Paneth-like cell
   
Ileum enteric progenitor 782 ileum precursor adult enteric progenitor
   
Ileum enteric stem cell 229 ileum stem cell adult enteric stem cell
   
Ileum transit amplifying cell 291 ileum precursor adult transit amplifying cell
   
Kidney ascending vasa recta endothe. 300 kidney endothelial adult ascending vasa recta endothe.
   
Kidney B cell 975 kidney immune adult B cell
   
Kidney T cell CD4+ 2435 kidney immune adult T cell CD4+
   
Kidney T cell CD8+ 991 kidney immune adult T cell CD8+
   
Kidney connecting tubule 157 kidney kidney specific adult connecting tubule
   
Kidney descending vasa recta endothe. 192 kidney endothelial adult descending vasa recta endothe.
   
Kidney epithelial progenitor cell 238 kidney precursor adult epithelial progenitor cell
   
Kidney fibroblast 145 kidney fibroblast adult fibroblast
   
Kidney glomerular endothelial cell 622 kidney endothelial adult glomerular endothelial cell
   
Kidney intercalated cell 829 kidney kidney specific adult intercalated cell
   
Kidney mononuclear phagocyte 1237 kidney immune adult mononuclear phagocyte
   
Kidney natural killer cell 2055 kidney immune adult natural killer cell
   
Kidney other immune 110 kidney immune adult other immune
   
Kidney pelvic epithelial cell 136 kidney epithelial adult pelvic epithelial cell
   
Kidney peritubular endothelial cell 851 kidney endothelial adult peritubular endothelial cell
   
Kidney podocyte 126 kidney kidney specific adult podocyte
   
Kidney principal cell 88 kidney kidney specific adult principal cell
   
Kidney proximal tubule cell 28061 kidney kidney specific adult proximal tubule cell
   
Kidney thick asc. loop of Henle 675 kidney kidney specific adult thick asc. loop of Henle
   
Kidney transitional urothelium 45 kidney epithelial adult transitional urothelium
   
Liver B cell 140 liver immune adult B cell
   
Liver cholangiocyte 121 liver epithelial adult cholangiocyte
   
Liver erythroid cell 53 liver immune adult erythroid cell
   
Liver hepatocyte 3498 liver hepatocyte adult hepatocyte
   
Liver macrophage (inflammatory) 822 liver immune adult macrophage (inflammatory)
   
Liver liver sinusoidal endothe. 1 340 liver endothelial adult liver sinusoidal endothe. 1
   
Liver liver sinusoidal endothe. 2,3 301 liver endothelial adult liver sinusoidal endothe. 2,3
   
Liver natural killer like 520 liver immune adult natural killer like
   
Liver macrophage (noninflammatory) 326 liver immune adult macrophage (noninflammatory)
   
Liver plasma B cell 279 liver immune adult plasma B cell
   
Liver liver portal endothelial 238 liver endothelial adult liver portal endothelial
   
Liver stellate 20 liver fibroblast adult stellate
   
Liver T cell alpha/beta 1115 liver immune adult T cell alpha/beta
   
Liver T cell gamma/delta 1 333 liver immune adult T cell gamma/delta 1
   
Liver T cell gamma/delta 2 338 liver immune adult T cell gamma/delta 2
   
Lung smooth muscle (airway) 693 lung muscle adult smooth muscle (airway)
   
Lung alveolar Type 1 cell 972 lung epithelial adult alveolar Type 1 cell
   
Lung alveolar Type 2 cell 4483 lung epithelial adult alveolar Type 2 cell
   
Lung artery/vein endothelial cell 2639 lung endothelial adult artery/vein endothelial cell
   
Lung airway basal cell 905 lung epithelial adult airway basal cell
   
Lung basophil/mast cell 1902 lung immune adult basophil/mast cell
   
Lung bronchial vessel cell 690 lung other adult bronchial vessel cell
   
Lung capillary endothelial cell 12835 lung endothelial adult capillary endothelial cell
   
Lung ciliated cell 1409 lung ciliated adult ciliated cell
   
Lung club cell 931 lung secretory adult club cell
   
Lung dendritic cell 1115 lung immune adult dendritic cell
   
Lung fibroblast 2234 lung fibroblast adult fibroblast
   
Lung goblet cell 159 lung secretory adult goblet cell
   
Lung lymphatic cell 467 lung other adult lymphatic cell
   
Lung lymphoid cell 13298 lung immune adult lymphoid cell
   
Lung macrophage/monocyte 18236 lung immune adult macrophage/monocyte
   
Lung mucous cell 491 lung secretory adult mucous cell
   
Lung other/rare 126 lung other adult other/rare
   
Lung pericyte 1608 lung endothelial adult pericyte
   
Lung smooth muscle (vascular) 469 lung muscle adult smooth muscle (vascular)
   
Muscle skeletal muscle ACTA1+ 256 muscle muscle adult skeletal muscle ACTA1+
   
Muscle smooth muscle ACTA2 MYH11 MYL9+ 1662 muscle muscle adult smooth muscle ACTA2 MYH11 MYL9+
   
Muscle adipocyte APOD+ CFD+ PLAC9+ 1182 muscle adipose adult adipocyte APOD+ CFD+ PLAC9+
   
Muscle macrophage C1QA+ CD74+ 614 muscle immune adult macrophage C1QA+ CD74+
   
Muscle platelets CD36+ VWF+ 1904 muscle immune adult platelets CD36+ VWF+
   
Muscle endothelial CLDN5+ PECAM1+ 831 muscle endothelial adult endothelial CLDN5+ PECAM1+
   
Muscle fibroblast COL1A1+ 2744 muscle fibroblast adult fibroblast COL1A1+
   
Muscle fibroblast DCN+ GSN+ MYOC+ 3489 muscle fibroblast adult fibroblast DCN+ GSN+ MYOC+
   
Muscle fibroblast FBN1+ MFAP+ CD55+ 2626 muscle fibroblast adult fibroblast FBN1+ MFAP+ CD55+
   
Muscle erythroblast HBA1+ 62 muscle immune adult erythroblast HBA1+
   
Muscle endothelial ICAM1+ SELE+ VCAM1+ 875 muscle endothelial adult endothelial ICAM1+ SELE+ VCAM1+
   
Muscle lymphoid IL7R+ PTPRC+ NKG7+ 1319 muscle immune adult lymphoid IL7R+ PTPRC+ NKG7+
   
Muscle muscle stem cells PAX7+ DLK1+ 1724 muscle stem cell adult muscle stem cells PAX7+ DLK1+
   
Muscle muscle stem cells PAX7- MYF5+ 1468 muscle stem cell adult muscle stem cells PAX7- MYF5+
   
Muscle pericytes RGS5+ MYL9+ 655 muscle endothelial adult pericytes RGS5+ MYL9+
   
Muscle macrophages (inflammatory) 647 muscle immune adult macrophages (inflammatory)
   
Pancreas acinar cell 617 pancreas secretory adult acinar cell
   
Pancreas stellate (activated) 253 pancreas fibroblast adult stellate (activated)
   
Pancreas islet alpha cell 2251 pancreas secretory adult islet alpha cell
   
Pancreas islet beta cell 2417 pancreas secretory adult islet beta cell
   
Pancreas islet delta cell 535 pancreas secretory adult islet delta cell
   
Pancreas ductal cell 911 pancreas epithelial adult ductal cell
   
Pancreas endothelial cell 237 pancreas endothelial adult endothelial cell
   
Pancreas islet epsilon cell 18 pancreas secretory adult islet epsilon cell
   
Pancreas islet gamma cell 244 pancreas secretory adult islet gamma cell
   
Pancreas other 68 pancreas other adult other
   
Pancreas stellate (quiescent) 163 pancreas fibroblast adult stellate (quiescent)
   
Placenta T cell CD4+ 4950 placenta immune adult T cell CD4+
   
Placenta T cell CD8+ 2293 placenta immune adult T cell CD8+
   
Placenta extravillous trophoblast 2360 placenta trophoblast adult extravillous trophoblast
   
Placenta endothelial cell 1260 placenta endothelial adult endothelial cell
   
Placenta T cell mucosal (MAIT) 968 placenta immune adult T cell mucosal (MAIT)
   
Placenta myeloid cell 7990 placenta immune adult myeloid cell
   
Placenta natural killer cell 12777 placenta immune adult natural killer cell
   
Placenta other immune 1244 placenta immune adult other immune
   
Placenta syncytiotrophoblast 1167 placenta trophoblast adult syncytiotrophoblast
   
Placenta villous cytotrophoblast 8281 placenta trophoblast adult villous cytotrophoblast
   
Placenta decidual perivascular cell 1830 placenta epithelial adult decidual perivascular cell
   
Placenta decidual stroma cell 12370 placenta muscle adult decidual stroma cell
   
Placenta fibroblast fetal in placenta 2215 placenta fibroblast adult fibroblast fetal in placenta
   
Rectum enteroendocrine cell 66 rectum secretory adult enteroendocrine cell
   
Rectum enterocyte 584 rectum epithelial adult enterocyte
   
Rectum goblet cell 899 rectum secretory adult goblet cell
   
Rectum Paneth-like cell 299 rectum secretory adult Paneth-like cell
   
Rectum enteric progenitor 1435 rectum precursor adult enteric progenitor
   
Rectum enteric stem cell 258 rectum stem cell adult enteric stem cell
   
Rectum transit amplifying cell 256 rectum precursor adult transit amplifying cell
   
Skin keratinocyte 1399 skin epithelial adult keratinocyte
   
Skin epidermal stem and progenitors 1187 skin stem cell adult epidermal stem and progenitors
   
Skin erythrocyte 310 skin immune adult erythrocyte
   
Skin endothelial lymphatic 294 skin endothelial adult endothelial lymphatic
   
Skin macrophage/dendritic cell 2228 skin immune adult macrophage/dendritic cell
   
Skin melanocyte 123 skin other adult melanocyte
   
Skin fibroblast (mesenchymal) 594 skin fibroblast adult fibroblast (mesenchymal)
   
Skin pericyte 1220 skin endothelial adult pericyte
   
Skin fibroblast (pro-inflammatory) 1793 skin fibroblast adult fibroblast (pro-inflammatory)
   
Skin fibroblast (secretory-papilli.) 1675 skin fibroblast adult fibroblast (secretory-papilli.)
   
Skin fibroblast (secretory-reticul.) 1886 skin fibroblast adult fibroblast (secretory-reticul.)
   
Skin T cell 1281 skin immune adult T cell
   
Skin endothelial vascular cell 1467 skin endothelial adult endothelial vascular cell
View table schema
Data last updated at UCSC: 2022-04-11 12:59:21


new Note: Released May 5, 2022

Description

This track displays single-cell data from 12 papers covering 14 organs. Cells are grouped together by organ and cell type. The cell types are based on annotations published alongside the papers. These were curated at UCSC as much as possible to use the same cell type terminologies across papers and organs. In some cases, we merged together small populations of cells annotated as distinct and related types into a single type so as to have enough cells to call gene expression levels accurate. The gene expression levels are normalized so that the total level of expression for all genes in a single cell or cell type adds up to one million.

Display Conventions and Configuration

The cell types are colored by which class they belong to according to the following table.

Please note, the coloring algorithm allows cells that show some mixed characteristics to = show blended colors so there will be some color variation within a class. In addition, cells with less than 100 transcripts will be a lighter shade and less concentrated in color to represent a low number of transcripts.

Color Cell classification
neural
adipose
fibroblast
immune
muscle
hepatocyte
trophoblast
secretory
ciliated
epithelial
endothelial
glia
stem cell or progenitor cell

Methods

Each organ or tissue was integrated and curated into the Genome Browser indiviually.

All components were normalized to be in parts per million using the matrixNormalize command available from UCSC. Metadata was cleaned up using the tabToTabDir tool. The major clean-ups were unpacking abbreviations, replacing jargon with standard English, choosing shorted terms to shorten long labels, labeling outliers, etc. Before integration we invited the original data producers as well as local biologists and informaticions to view the data.

Credits

Many thanks to the data contributing labs for sharing their high quality research. Thanks to the Cell Browser team including Matt Speir and Max Haeussler, for their work in integratinging these datasets into the Cell Browser. In most cases, their efforts were ahead of our own and we could leverage their work making the job much easier. Within the Genome Browser group, Jim Kent did the initial wrangling, and Brittney Wick did substantial data cleanup and coordination with the labs.

References

Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM et al. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure. Cell Syst. 2016 Oct 26;3(4):346-360.e4. PMID: 27667365; PMC: PMC5228327

Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R, Zhang F et al. A human cell atlas of fetal gene expression. Science. 2020 Nov 13;370(6518). PMID: 33184181; PMC: PMC7780123

Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L, Steemers FJ et al. The single-cell transcriptional landscape of mammalian organogenesis. Nature. 2019 Feb;566(7745):496-502. PMID: 30787437; PMC: PMC6434952

De Micheli AJ, Spector JA, Elemento O, Cosgrove BD. A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations. Skelet Muscle. 2020 Jul 6;10(1):19. PMID: 32624006; PMC: PMC7336639

Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M et al. Integrated analysis of multimodal single-cell data. Cell. 2021 Jun 24;184(13):3573-3587.e29. PMID: 34062119; PMC: PMC8238499

Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M, Polanski K, Heinig M, Lee M et al. Cells of the adult human heart. Nature. 2020 Dec;588(7838):466-472. PMID: 32971526; PMC: PMC7681775

MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares I et al. Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations. Nat Commun. 2018 Oct 22;9(1):4383. PMID: 30348985; PMC: PMC6197289

Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes M, Lyko F. Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming. Commun Biol. 2020 Apr 23;3(1):188. PMID: 32327715; PMC: PMC7181753

Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL, Staniforth JUL, Vieira Braga FA et al. Spatiotemporal immune zonation of the human kidney. Science. 2019 Sep 27;365(6460):1461-1466. PMID: 31604275; PMC: PMC7343525

Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J et al. A molecular cell atlas of the human lung from single-cell RNA sequencing. Nature. 2020 Nov;587(7835):619-625. PMID: 33208946; PMC: PMC7704697

Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH, Kriegstein AR. Single-cell genomics identifies cell type-specific molecular changes in autism. Science. 2019 May 17;364(6441):685-689. PMID: 31097668; PMC: PMC7678724

Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E, Polański K, Goncalves A et al. Single-cell reconstruction of the early maternal-fetal interface in humans. Nature. 2018 Nov;563(7731):347-353. PMID: 30429548

Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG. Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine. J Exp Med. 2020 Feb 3;217(2). PMID: 31753849; PMC: PMC7041720