Schema for mrnaOrientInfo
  Database: micMur1    Primary Table: mrnaOrientInfo    Row Count: 160   Data last updated: 2017-07-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_102452varchar(255) values Reference sequence chromosome or scaffold
chromStart 198int(10) unsigned range Start position in chromosome
chromEnd 300int(10) unsigned range End position in chromosome
name FJ869064varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      micMur1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_102452198300FJ86906400000
585scaffold_102452198300FJ86906500000
585scaffold_102452198300FJ86906600000
585scaffold_102452198300FJ86906700000
585scaffold_102452198300FJ86906800000
585scaffold_102452198300FJ86906900000
585scaffold_102452198300FJ86907000000
585scaffold_105624049140603HQ22294300000
585scaffold_105624049140603HQ22294400000
585scaffold_105624049140603HQ22294500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.