Schema for mrnaOrientInfo
  Database: melGal5    Primary Table: mrnaOrientInfo    Row Count: 521   Data last updated: 2017-01-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 123217int(10) unsigned range Start position in chromosome
chromEnd 124936int(10) unsigned range End position in chromosome
name AM167974varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 25smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 44smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      melGal5.all_mrna.qName (via mrnaOrientInfo.name)
      melGal5.refFlat.name (via mrnaOrientInfo.name)
      melGal5.refGene.name (via mrnaOrientInfo.name)
      melGal5.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr1123217124936AM1679744250440
588chr1491180491447KC59410500000
644chr177352557756000KR52857770000
733chr11948279919496446KR52857577000
848chr13452571634526953JQ28047120000
851chr13496949534971133KC59410320000
859chr13596572635978629DQ07497640000
885chr13938551739386204GU22306800000
899chr14124968341251525KC59410110000
949chr14774486947747845GQ28132630000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.