Schema for xenoRefFlat
  Database: gorGor5    Primary Table: xenoRefFlat    Row Count: 338,535   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ATP8Avarchar(255) values Name of gene as it appears in genome browser.
name NM_001144177varchar(255) values Name of gene
chrom CYUI01015403v1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 1502809int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 1713236int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 1502809int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 1713236int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 13int(10) unsigned range Number of exons
exonStarts 1502809,1545179,1545409,155...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 1502878,1545302,1545481,155...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        gorGor5.xenoRefGene.name (via xenoRefFlat.name)
      gorGor5.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ATP8ANM_001144177CYUI01015403v1-1502809171323615028091713236131502809,1545179,1545409,1553980,1554558,1554760,1597167,1663471,1664464,1667119,1670534,1677184,1713137,1502878,1545302,1545481,1553984,1554668,1554946,1597314,1663549,1664512,1667224,1670633,1677256,1713236,
ACOT8NM_001266088CYUI01014965v1+268880827045572688894270439262688808,2690919,2697527,2701815,2702515,2704273,2689022,2691053,2697753,2701973,2702710,2704557,
IDH3BNM_001266087CYUI01015378v1-2558015256452125583692564515122558015,2559197,2559374,2559706,2559939,2560133,2560373,2560585,2563773,2563987,2564251,2564479,2558456,2559261,2559466,2559853,2560042,2560267,2560506,2560646,2563894,2564086,2564332,2564521,
CCND3NM_001265987CYUI01015109v1-729049072972637291485729718877290490,7291167,7291409,7292104,7292781,7295911,7296990,7291051,7291398,7291653,7292241,7292941,7296127,7297263,
SYT4NM_001265986CYUI01015370v1-8990259086449014779084175899025,900507,902845,904715,908383,900486,901785,902966,905530,908644,
PPP5CNM_001266086CYUI01000008v1+1547554159092415476011590429141547554,1554242,1575853,1576692,1583641,1584010,1585034,1587321,1587594,1588620,1588763,1590133,1590366,1590518,1547722,1554484,1576001,1576814,1583707,1584109,1585140,1587464,1587684,1588659,1588942,1590215,1590479,1590924,
ARHGEF1NM_199002CYUI01015213v1-79799282092579865782090036797992,798640,798695,798822,798941,799413,799611,800212,800392,801043,801316,801642,802021,802527,802767,803068,803391,806831,80 ...798340,798695,798740,798941,798985,799500,799682,800254,800480,801211,801392,801720,802122,802642,802892,803151,803537,806892,80 ...
Nf1NM_170252CYUI01015791v1+99471333469947133346249947,10272,10847,12057,12735,12857,13095,13124,15499,38242,40241,41579,45087,105560,107228,110020,114202,115806,116108,116833,11 ...9977,10395,10907,12181,12770,12914,13122,13211,15589,38335,40386,41668,45194,105996,107567,110215,114394,115946,116361,116956,11 ...
LOC105376772NR_135170CYUI01000725v1+215430033003300322154,2654,2187,3003,
slc6a6bNM_001139800CYUI01014916v1+4392670443426143926704430995154392670,4392735,4394717,4396555,4406937,4415689,4417030,4417262,4421377,4426371,4426511,4427634,4428254,4430832,4434219,4392735,4392898,4394847,4396795,4407068,4415824,4417131,4417390,4421486,4426510,4426513,4427738,4428354,4430995,4434261,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.