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Database: ce2 Primary Table: all_est Row Count: 395,475   Data last updated: 2016-05-31
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 541 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 2 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 2 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 1576 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | EC037150 | varchar(255) | values | Query sequence name |
qSize | 549 | int(10) unsigned | range | Query sequence size |
qStart | 6 | int(10) unsigned | range | Alignment start position in query |
qEnd | 549 | int(10) unsigned | range | Alignment end position in query |
tName | chrI | varchar(255) | values | Target sequence name |
tSize | 15080483 | int(10) unsigned | range | Target sequence size |
tStart | 4123 | int(10) unsigned | range | Alignment start position in target |
tEnd | 6242 | int(10) unsigned | range | Alignment end position in target |
blockCount | 3 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 235,102,206, | longblob | | Size of each block |
qStarts | 6,241,343, | longblob | | Start of each block in query. |
tStarts | 4123,5194,6036, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 541 | 2 | 0 | 0 | 0 | 0 | 2 | 1576 | + | EC037150 | 549 | 6 | 549 | chrI | 15080483 | 4123 | 6242 | 3 | 235,102,206, | 6,241,343, | 4123,5194,6036, |
585 | 655 | 0 | 0 | 0 | 0 | 0 | 3 | 4975 | + | BJ793773 | 655 | 0 | 655 | chrI | 15080483 | 4131 | 9761 | 4 | 227,102,291,35, | 0,227,329,620, | 4131,5194,6036,9726, |
585 | 596 | 1 | 0 | 7 | 0 | 0 | 3 | 1577 | + | BJ142188 | 624 | 19 | 623 | chrI | 15080483 | 4148 | 6329 | 4 | 46,163,102,293, | 19,65,228,330, | 4148,4195,5194,6036, |
585 | 280 | 0 | 0 | 1 | 0 | 0 | 1 | 836 | + | AV176119 | 300 | 0 | 281 | chrI | 15080483 | 4180 | 5297 | 2 | 178,103, | 0,178, | 4180,5194, |
585 | 278 | 0 | 0 | 0 | 0 | 0 | 1 | 836 | + | C30930 | 300 | 1 | 279 | chrI | 15080483 | 4183 | 5297 | 2 | 175,103, | 1,176, | 4183,5194, |
585 | 278 | 0 | 0 | 0 | 0 | 0 | 1 | 836 | + | C32232 | 300 | 0 | 278 | chrI | 15080483 | 4183 | 5297 | 2 | 175,103, | 0,175, | 4183,5194, |
585 | 508 | 0 | 0 | 0 | 0 | 0 | 2 | 1576 | + | CB405158 | 532 | 0 | 508 | chrI | 15080483 | 4245 | 6329 | 3 | 113,102,293, | 0,113,215, | 4245,5194,6036, |
585 | 514 | 1 | 0 | 0 | 1 | 1 | 2 | 4139 | - | EC037119 | 539 | 6 | 522 | chrI | 15080483 | 5194 | 9848 | 4 | 102,206,85,122, | 17,119,326,411, | 5194,6036,6242,9726, |
585 | 541 | 0 | 0 | 0 | 0 | 0 | 3 | 4387 | - | CB386060 | 547 | 0 | 541 | chrI | 15080483 | 5194 | 10122 | 4 | 102,291,120,28, | 6,108,399,519, | 5194,6036,9726,10094, |
585 | 600 | 0 | 0 | 0 | 0 | 0 | 3 | 4387 | - | BJ114595 | 620 | 20 | 620 | chrI | 15080483 | 5245 | 10232 | 4 | 51,291,120,138, | 0,51,342,462, | 5245,6036,9726,10094, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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