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Database: apiMel2 Primary Table: all_est Row Count: 79,503 Data last updated: 2016-06-08
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 471 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 28 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 77 | int(10) unsigned | range | Number of bases inserted in target |
| strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | DB755625 | varchar(255) | values | Query sequence name |
| qSize | 499 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 499 | int(10) unsigned | range | Alignment end position in query |
| tName | Group1 | varchar(255) | values | Target sequence name |
| tSize | 25433307 | int(10) unsigned | range | Target sequence size |
| tStart | 589 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 1165 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 2 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 155,344, | longblob | | Size of each block |
| qStarts | 0,155, | longblob | | Start of each block in query. |
| tStarts | 589,821, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 471 | 0 | 28 | 0 | 0 | 0 | 1 | 77 | + | DB755625 | 499 | 0 | 499 | Group1 | 25433307 | 589 | 1165 | 2 | 155,344, | 0,155, | 589,821, |
| 585 | 499 | 4 | 29 | 1 | 2 | 13 | 3 | 16 | + | DB756926 | 546 | 0 | 546 | Group1 | 25433307 | 617 | 1166 | 5 | 6,9,7,47,464, | 0,6,27,34,82, | 617,624,635,655,702, |
| 585 | 509 | 1 | 29 | 1 | 0 | 0 | 0 | 0 | + | DB757775 | 540 | 0 | 540 | Group1 | 25433307 | 626 | 1166 | 1 | 540, | 0, | 626, |
| 585 | 503 | 2 | 29 | 0 | 2 | 2 | 0 | 0 | + | DB776996 | 536 | 0 | 536 | Group1 | 25433307 | 632 | 1166 | 3 | 42,110,382, | 0,43,154, | 632,674,784, |
| 585 | 478 | 1 | 29 | 0 | 1 | 1 | 0 | 0 | + | DB757908 | 509 | 0 | 509 | Group1 | 25433307 | 658 | 1166 | 2 | 352,156, | 0,353, | 658,1010, |
| 585 | 293 | 0 | 239 | 0 | 0 | 0 | 0 | 0 | + | DB776355 | 532 | 0 | 532 | Group1 | 25433307 | 1192 | 1724 | 1 | 532, | 0, | 1192, |
| 585 | 300 | 1 | 237 | 0 | 0 | 0 | 0 | 0 | + | DB768172 | 538 | 0 | 538 | Group1 | 25433307 | 1194 | 1732 | 1 | 538, | 0, | 1194, |
| 585 | 292 | 2 | 206 | 0 | 2 | 4 | 2 | 3 | + | DB766866 | 504 | 0 | 504 | Group1 | 25433307 | 1221 | 1724 | 4 | 13,5,9,473, | 0,13,19,31, | 1221,1236,1241,1251, |
| 585 | 200 | 5 | 120 | 0 | 1 | 1 | 0 | 0 | + | DB776644 | 346 | 20 | 346 | Group1 | 25433307 | 1542 | 1867 | 2 | 81,244, | 20,102, | 1542,1623, |
| 585 | 532 | 1 | 0 | 0 | 0 | 0 | 2 | 241 | - | BI511561 | 541 | 8 | 541 | Group1 | 25433307 | 2796 | 3570 | 3 | 149,145,239, | 0,149,294, | 2796,3009,3331, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server