Schema for all_est
  Database: petMar3    Primary Table: all_est    Row Count: 157,672   Data last updated: 2018-03-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 665smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 231int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 5int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 13int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 5316int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA618656varchar(255) values Query sequence name
qSize 360int(10) unsigned range Query sequence size
qStart 65int(10) unsigned range Alignment start position in query
qEnd 315int(10) unsigned range Alignment end position in query
tName PIZI01000003v1varchar(255) values Target sequence name
tSize 25736822int(10) unsigned range Target sequence size
tStart 10565216int(10) unsigned range Alignment start position in target
tEnd 10570769int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 37,5,25,80,83,7,longblob   Size of each block
qStarts 45,84,99,124,204,288,longblob   Start of each block in query.
tStarts 10565216,10565253,10565266,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      petMar3.all_mrna.qName (via all_est.qName)
      petMar3.estOrientInfo.name (via all_est.qName)
      petMar3.intronEst.qName (via all_est.qName)
      petMar3.xenoRefGene.name (via all_est.qName)
      petMar3.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
66523110531345316-AA61865636065315PIZI01000003v1257368221056521610570769637,5,25,80,83,7,45,84,99,124,204,288,10565216,10565253,10565266,10568516,10570677,10570762,
6753032061100+AA6186573500312PIZI01000016v1159194531191022511910536236,275,0,37,11910225,11910261,
6062702030022+AA6186553179284PIZI01000019v1148768962836696283697335,18,252,9,14,32,2836696,2836702,2836721,
59216150329772313-AA61864628748226PIZI01000020v1146796319578561030338824,52,60,12,7,4,6,4,61,93,145,206,218,225,229,235,957856,957886,1030239,1030301,1030314,1030322,1030327,1030334,
592122102224177-AA61864522883210PIZI01000020v114679631957907958209626,27,40,9,10,13,18,44,72,112,122,132,957907,958105,958132,958173,958184,958196,
5922330044127504-AA6186482854253PIZI01000020v114679631989305990046911,41,67,63,20,5,8,8,14,32,52,94,161,225,246,251,259,267,989305,989324,989365,989921,989986,990008,990014,990023,990032,
5921593023147190+AA61864628748226PIZI01000020v1146796311045672104602684,6,5,6,12,53,54,24,48,52,58,63,69,82,144,202,1045672,1045677,1045684,1045690,1045697,1045711,1045946,1046002,
5972882073322-AA6186523462302PIZI01000022v11462602916719821672281611,78,35,150,17,6,44,56,135,171,321,338,1671982,1671993,1672071,1672106,1672257,1672275,
59527940136611+AA6186533447309PIZI01000026v11385047014187941419091815,19,14,52,130,53,5,8,7,22,42,57,110,241,295,301,1418794,1418810,1418829,1418843,1418895,1419025,1419078,1419083,
6022442034552294+AA6186492910254PIZI01000030v11274060222497202252263910,7,11,13,37,100,44,22,5,0,10,17,28,42,79,180,225,249,2249720,2249731,2249739,2249751,2249766,2252092,2252192,2252236,2252258,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.