Schema for all_est
  Database: anoCar2    Primary Table: all_est    Row Count: 177,795   Data last updated: 2016-06-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 435int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 335int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 1int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName FG752277varchar(255) values Query sequence name
qSize 782int(10) unsigned range Query sequence size
qStart 9int(10) unsigned range Alignment start position in query
qEnd 782int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 263920458int(10) unsigned range Target sequence size
tStart 4459int(10) unsigned range Alignment start position in target
tEnd 5233int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 740,33,longblob   Size of each block
qStarts 9,749,longblob   Start of each block in query.
tStarts 4459,5200,longblob   Start of each block in target.

Connected Tables and Joining Fields
        anoCar2.all_mrna.qName (via all_est.qName)
      anoCar2.estOrientInfo.name (via all_est.qName)
      anoCar2.intronEst.qName (via all_est.qName)
      anoCar2.xenoMrna.qName (via all_est.qName)
      anoCar2.xenoRefGene.name (via all_est.qName)
      anoCar2.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585435333500011+FG7522777829782chr1263920458445952332740,33,9,749,4459,5200,
58553832810332143-FG7522298261826chr126392045845455510610,8,8,37,670,89,0,11,19,28,66,736,4545,4555,4564,4572,4609,5421,
585422330503311+FG7775727435738chr126392045814104148355646,28,4,14,38,5,652,680,685,700,14104,14750,14779,14783,14797,
585194261100055-FG7774288070807chr12639204581488215694620,14,47,488,220,18,0,20,34,81,569,789,14882,14903,14918,14966,15455,15676,
58542514301412-FG6687388520473chr126392045877490779612429,40,379,812,77490,77921,
585678412000011+FG7502588020802chr126392045877495782982751,51,0,751,77495,78247,
5857401136019216-FG7502108880886chr12639204587820279095312,67,798,2,23,90,78202,78229,78297,
58545831070332858+FG7123355710571chr126392045879423808496383,34,69,51,17,14,0,383,418,487,539,557,79423,79807,79841,80767,80818,80835,
58571734903363560+FG6712787796778chr1263920458796738400210144,91,157,132,142,37,9,36,14,7,6,150,241,398,530,673,710,719,756,771,79673,79819,80767,82885,83755,83897,83935,83945,83981,83995,
5858072200067847-FG6712308143814chr12639204588083889496786,132,249,116,114,86,28,0,86,218,467,583,697,783,80838,82885,83755,85003,85290,86736,89468,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.