Schema for xenoRefFlat
  Database: hg38    Primary Table: xenoRefFlat    Row Count: 200,365   Data last updated: 2020-08-17
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName TNXBvarchar(255) values Name of gene as it appears in genome browser.
name NM_001123204varchar(255) values Name of gene
chrom chr6_GL000251v2_altvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 3479495int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 3547627int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 3479670int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 3536531int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 63int(10) unsigned range Number of exons
exonStarts 3479495,3479653,3480096,348...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 3479639,3479776,3480256,348...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hg38.xenoMrna.qName (via xenoRefFlat.name)
      hg38.xenoRefGene.name (via xenoRefFlat.name)
      hg38.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
TNXBNM_001123204chr6_GL000251v2_alt-3479495354762734796703536531633479495,3479653,3480096,3480333,3480587,3480776,3481020,3481277,3481496,3481758,3482072,3482328,3482702,3483327,3484496,3484759, ...3479639,3479776,3480256,3480495,3480684,3480928,3481158,3481403,3481640,3481880,3482214,3482451,3483038,3483648,3484758,3484784, ...
baiap2NM_001127964chr17+810352638111583081035263811068411881035263,81053663,81054452,81057880,81084831,81085653,81085780,81086442,81099927,81103501,81103615,81104041,81104165,81104512,81 ...81035304,81053742,81054453,81057967,81084893,81085721,81085784,81086580,81100080,81103603,81103723,81104101,81104171,81104713,81 ...
emc10NM_001102389chr19+50480108504822025048010850482202450480108,50480580,50480878,50482148,50480156,50480703,50480977,50482202,
psmd14.LNM_001092389chr2+16131882216141140016131882516141140010161318822,161367477,161367777,161370106,161371171,161385463,161391095,161395077,161408836,161411301,161318873,161367543,161367903,161370177,161371322,161385563,161391178,161395203,161408899,161411400,
Olr752NM_001000367chr1+52451638275245163827252451,63105,52608,63827,
Olr757NM_001000613chr1+52451638535245163853252451,63110,52613,63853,
Olr758NM_001000369chr1+62949638876294963887162949,63887,
Olfr480NM_020291chr11_KN538368v1_alt-16916177921691617792416916,17252,17411,17717,17219,17327,17537,17792,
Olr749NM_001000615chr1+69165699726916569972369165,69513,69768,69477,69741,69972,
st8sia4NM_001099416chr5-1008118581008866021008118581008866024100811858,100856077,100856102,100886341,100812125,100856081,100856260,100886602,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.