Schema for ncbiRefSeqCurated
  Database: saiBol1    Primary Table: ncbiRefSeqCurated    Row Count: 28   Data last updated: 2020-03-30
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 960smallint(5) unsigned range Indexing field to speed chromosome range queries.
name NM_001291087.1varchar(255) values Name of gene (usually transcript_id from GTF)
chrom JH378107varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 49207164int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 49220327int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 49207442int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 49215509int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 49207164,49214305,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 49207447,49220327,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range score
name2 PEG10varchar(255) values Alternate name (e.g. gene_id from GTF)
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 0,2,longblob   Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region.

Connected Tables and Joining Fields
        saiBol1.ncbiRefSeq.name (via ncbiRefSeqCurated.name)
      saiBol1.ncbiRefSeqCds.id (via ncbiRefSeqCurated.name)
      saiBol1.ncbiRefSeqLink.id (via ncbiRefSeqCurated.name)
      saiBol1.ncbiRefSeqPredicted.name (via ncbiRefSeqCurated.name)
      saiBol1.ncbiRefSeqPsl.qName (via ncbiRefSeqCurated.name)
      saiBol1.seqNcbiRefSeq.acc (via ncbiRefSeqCurated.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
960NM_001291087.1JH378107+49207164492203274920744249215509249207164,49214305,49207447,49220327,0PEG10cmplcmpl0,2,
960NM_001291086.1JH378107+49207164492203274920744249216657349207164,49214305,49215488,49207447,49215488,49220327,0PEG10cmplcmpl0,2,1,
102NM_001279999.1JH378108-305166873053995430516687305399541230516687,30518670,30519753,30520739,30521184,30521993,30523330,30526401,30526755,30532408,30534993,30539750,30516903,30518852,30519931,30520888,30521358,30522177,30523527,30526543,30526889,30532532,30535185,30539954,0PCSK9cmplcmpl0,1,0,1,1,0,1,0,1,0,0,0,
14NM_001279973.1JH378108+470411194741984947041119474198491747041119,47112830,47113627,47151078,47160460,47161408,47161976,47162614,47169495,47170994,47171831,47265561,47355870,47363366,47 ...47041367,47112905,47113699,47151147,47160618,47161551,47162118,47162911,47169519,47171059,47171934,47265750,47356001,47363539,47 ...0NTRK3cmplcmpl0,2,2,2,2,1,0,1,1,1,0,1,1,0,2,0,0,
840NM_001280014.1JH378112-334476763351489433447730335148741033447676,33449214,33451630,33460912,33464958,33471899,33492084,33493106,33509098,33514769,33447838,33449454,33451816,33460996,33465049,33472056,33492199,33493249,33509243,33514894,0FKBP5cmplcmpl0,0,0,0,2,1,0,1,0,0,
696NM_001278540.1JH378115-14636588146504391463683514643579914636588,14637206,14637546,14637927,14638875,14642506,14643089,14643439,14650319,14636947,14637262,14637681,14637979,14638943,14642608,14643267,14643617,14650439,0DHRS2cmplcmpl2,0,0,2,0,0,2,0,-1,
10NM_001279987.1JH378131+15475910158203691547591015820364815475910,15646508,15711757,15754855,15757219,15787907,15793816,15820208,15477664,15646648,15711874,15755203,15757364,15788038,15793974,15820369,0NR3C2cmplcmpl0,2,1,1,1,2,1,0,
597NM_001280003.1JH378137-162968716347411629687163474151629687,1630484,1631948,1632322,1634571,1630067,1630650,1632226,1632549,1634741,0LHX1cmplcmpl1,0,1,2,0,
696NM_001281860.1JH378137-14592061146160081459324314615862714592061,14594594,14599927,14601219,14607320,14608590,14615850,14593270,14594723,14600059,14601309,14607465,14608673,14616008,0TVP23Bcmplcmpl0,0,0,0,2,0,0,
672NM_001279960.1JH378149+11488783114985171148878311498517611488783,11489444,11494987,11497000,11497301,11498182,11488879,11489624,11495176,11497177,11497443,11498517,0AIPL1cmplcmpl0,0,0,0,0,1,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.