Schema for SGDP copy number - SGDP copy number estimates
  Database: hs1    Primary Table: hub_3671779_EUR_Saami_LP6005592-DNA_D01_wssd Data last updated: 2022-04-20
Big Bed File Download: /gbdb/hs1/sgdpCopyNumber/LP6005592-DNA_D01_wssd.bb
Item Count: 1,179,227
The data is stored in the binary BigBed format.

Format description: Copy number track
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart165554721Start position of feature on chromosome
chromEnd165605880End position of feature on chromosome
name3Individual name
score0Score
strand++ or - for strand
thickStart0Coding region start
thickEnd0Coding region end
reserved0,0,205LightGray:0, DarkGray:1, Black:2, MediumBlue:3, RoyalBlue:4, Periwinkle:5, LightGreen:6, Yellow:7, Orange:8, Maroon:9, Red:10+
ID2.935856313967685Copy Number

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreservedID
chr116555472116560588030+000,0,2052.935856313967685
chr116560588016560699820+000,0,02.04896297977989
chr116560699816561940820+000,0,01.6761692423887902
chr116561940816562215430+000,0,2052.6035645960705684
chr116562215416562330230+000,0,2053.2135543474967
chr116562330216562830820+000,0,02.4138334054492474
chr116562830816563011620+000,0,02.092861319358577
chr116563011616563267920+000,0,02.0189946197057105
chr116563267916563478420+000,0,01.907544384405807
chr116563478416563668920+000,0,02.1159435121261545

EUR_Saami_LP6005592-DNA_D01 wssd CN (hub_3671779_EUR_Saami_LP6005592-DNA_D01_wssd) Track Description
 

Description

This track represents copy number estimates form the Simons Genome Diversity Project. Copy number is estimated over 500 bp windows of uniquely mappable sequence. Sequences are colored from cold to hot (0 - 120+) and exact copy can be found by clicking on the region of interest.

Code Availability

GitHub

Copy Number Key

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Credits

Please feel free to contact William Harvey or Mitchell Vollger with any questions and/or concerns regarding this track.

References

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science 2002

Pendleton AL, Shen F, Taravella AM, Emery S, Veeramah KR, Boyko AR, Kidd JM. Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication. BMC Biol. 2018

Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, et al. Global diversity, population stratification, and selection of human copy-number variation. Science. 2015

Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, et al. Diversity of human copy number. Science. 2010

Sample table

SampleRead file
LP6005441-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A01.srt.aln.bam
LP6005441-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A03.srt.aln.bam
LP6005441-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A04.srt.aln.bam
LP6005441-DNA_A05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A05.srt.aln.bam
LP6005441-DNA_A06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A06.srt.aln.bam
LP6005441-DNA_A08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A08.srt.aln.bam
LP6005441-DNA_A09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A09.srt.aln.bam
LP6005441-DNA_A10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A10.srt.aln.bam
LP6005441-DNA_A11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A11.srt.aln.bam
LP6005441-DNA_A12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A12.srt.aln.bam
LP6005441-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B01.srt.aln.bam
LP6005441-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B02.srt.aln.bam
LP6005441-DNA_B03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B03.srt.aln.bam
LP6005441-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B04.srt.aln.bam
LP6005441-DNA_B05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B05.srt.aln.bam
LP6005441-DNA_B06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B06.srt.aln.bam
LP6005441-DNA_B07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B07.srt.aln.bam
LP6005441-DNA_B08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B08.srt.aln.bam
LP6005441-DNA_B09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B09.srt.aln.bam
LP6005441-DNA_B10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B10.srt.aln.bam
LP6005441-DNA_B11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B11.srt.aln.bam
LP6005441-DNA_B12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B12.srt.aln.bam
LP6005441-DNA_C02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C02.srt.aln.bam
LP6005441-DNA_C03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C03.srt.aln.bam
LP6005441-DNA_C05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C05.srt.aln.bam
LP6005441-DNA_C06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C06.srt.aln.bam
LP6005441-DNA_C07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C07.srt.aln.bam
LP6005441-DNA_C08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C08.srt.aln.bam
LP6005441-DNA_C09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C09.srt.aln.bam
LP6005441-DNA_C10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C10.srt.aln.bam
LP6005441-DNA_C11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C11.srt.aln.bam
LP6005441-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D01.srt.aln.bam
LP6005441-DNA_D02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D02.srt.aln.bam
LP6005441-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D03.srt.aln.bam
LP6005441-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D04.srt.aln.bam
LP6005441-DNA_D05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D05.srt.aln.bam
LP6005441-DNA_D06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D06.srt.aln.bam
LP6005441-DNA_D07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D07.srt.aln.bam
LP6005441-DNA_D08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D08.srt.aln.bam
LP6005441-DNA_D09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D09.srt.aln.bam
LP6005441-DNA_D10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D10.srt.aln.bam
LP6005441-DNA_D11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D11.srt.aln.bam
LP6005441-DNA_D12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D12.srt.aln.bam
LP6005441-DNA_E02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E02.srt.aln.bam
LP6005441-DNA_E03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E03.srt.aln.bam
LP6005441-DNA_E05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E05.srt.aln.bam
LP6005441-DNA_E06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E06.srt.aln.bam
LP6005441-DNA_E07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E07.srt.aln.bam
LP6005441-DNA_E08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E08.srt.aln.bam
LP6005441-DNA_E09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E09.srt.aln.bam
LP6005441-DNA_E10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E10.srt.aln.bam
LP6005441-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F01.srt.aln.bam
LP6005441-DNA_F02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F02.srt.aln.bam
LP6005441-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F03.srt.aln.bam
LP6005441-DNA_F04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F04.srt.aln.bam
LP6005441-DNA_F05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F05.srt.aln.bam
LP6005441-DNA_F06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F06.srt.aln.bam
LP6005441-DNA_F07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F07.srt.aln.bam
LP6005441-DNA_F08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F08.srt.aln.bam
LP6005441-DNA_F09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F09.srt.aln.bam
LP6005441-DNA_F10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F10.srt.aln.bam
LP6005441-DNA_F12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F12.srt.aln.bam
LP6005441-DNA_G02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G02.srt.aln.bam
LP6005441-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G03.srt.aln.bam
LP6005441-DNA_G04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G04.srt.aln.bam
LP6005441-DNA_G05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G05.srt.aln.bam
LP6005441-DNA_G06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G06.srt.aln.bam
LP6005441-DNA_G07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G07.srt.aln.bam
LP6005441-DNA_G08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G08.srt.aln.bam
LP6005441-DNA_G09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G09.srt.aln.bam
LP6005441-DNA_G10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G10.srt.aln.bam
LP6005441-DNA_G11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G11.srt.aln.bam
LP6005441-DNA_G12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G12.srt.aln.bam
LP6005441-DNA_H02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H02.srt.aln.bam
LP6005441-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H03.srt.aln.bam
LP6005441-DNA_H05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H05.srt.aln.bam
LP6005441-DNA_H06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H06.srt.aln.bam
LP6005441-DNA_H07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H07.srt.aln.bam
LP6005441-DNA_H08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H08.srt.aln.bam
LP6005441-DNA_H09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H09.srt.aln.bam
LP6005441-DNA_H10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H10.srt.aln.bam
LP6005441-DNA_H11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H11.srt.aln.bam
LP6005441-DNA_H12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H12.srt.aln.bam
LP6005442-DNA_A02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A02.srt.aln.bam
LP6005442-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A03.srt.aln.bam
LP6005442-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A04.srt.aln.bam
LP6005442-DNA_A08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A08.srt.aln.bam
LP6005442-DNA_A09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A09.srt.aln.bam
LP6005442-DNA_A10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A10.srt.aln.bam
LP6005442-DNA_A11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A11.srt.aln.bam
LP6005442-DNA_A12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A12.srt.aln.bam
LP6005442-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B01.srt.aln.bam
LP6005442-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B02.srt.aln.bam
LP6005442-DNA_B03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B03.srt.aln.bam
LP6005442-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B04.srt.aln.bam
LP6005442-DNA_B08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B08.srt.aln.bam
LP6005442-DNA_B10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B10.srt.aln.bam
LP6005442-DNA_B11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B11.srt.aln.bam
LP6005442-DNA_B12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B12.srt.aln.bam
LP6005442-DNA_C02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C02.srt.aln.bam
LP6005442-DNA_C04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C04.srt.aln.bam
LP6005442-DNA_C07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C07.srt.aln.bam
LP6005442-DNA_C10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C10.srt.aln.bam
LP6005442-DNA_C11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C11.srt.aln.bam
LP6005442-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D01.srt.aln.bam
LP6005442-DNA_D02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D02.srt.aln.bam
LP6005442-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D03.srt.aln.bam
LP6005442-DNA_D08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D08.srt.aln.bam
LP6005442-DNA_D09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D09.srt.aln.bam
LP6005442-DNA_D10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D10.srt.aln.bam
LP6005442-DNA_D11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D11.srt.aln.bam
LP6005442-DNA_E04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E04.srt.aln.bam
LP6005442-DNA_E07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E07.srt.aln.bam
LP6005442-DNA_E10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E10.srt.aln.bam
LP6005442-DNA_E11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E11.srt.aln.bam
LP6005442-DNA_E12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E12.srt.aln.bam
LP6005442-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F01.srt.aln.bam
LP6005442-DNA_F02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F02.srt.aln.bam
LP6005442-DNA_F04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F04.srt.aln.bam
LP6005442-DNA_F09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F09.srt.aln.bam
LP6005442-DNA_F10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F10.srt.aln.bam
LP6005442-DNA_F11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F11.srt.aln.bam
LP6005442-DNA_F12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F12.srt.aln.bam
LP6005442-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G01.srt.aln.bam
LP6005442-DNA_G02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G02.srt.aln.bam
LP6005442-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G03.srt.aln.bam
LP6005442-DNA_G04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G04.srt.aln.bam
LP6005442-DNA_G07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G07.srt.aln.bam
LP6005442-DNA_G09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G09.srt.aln.bam
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LP6005592-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_D03.srt.aln.bam
LP6005592-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_D04.srt.aln.bam
LP6005592-DNA_E01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E01.srt.aln.bam
LP6005592-DNA_E02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E02.srt.aln.bam
LP6005592-DNA_E05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E05.srt.aln.bam
LP6005592-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F01.srt.aln.bam
LP6005592-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F03.srt.aln.bam
LP6005592-DNA_F05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F05.srt.aln.bam
LP6005592-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G01.srt.aln.bam
LP6005592-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G03.srt.aln.bam
LP6005592-DNA_G05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G05.srt.aln.bam
LP6005592-DNA_H01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_H01.srt.aln.bam
LP6005592-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_H03.srt.aln.bam
LP6005619-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_A01.srt.aln.bam
LP6005619-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_B01.srt.aln.bam
LP6005619-DNA_C01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_C01.srt.aln.bam
LP6005619-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_D01.srt.aln.bam
LP6005677-DNA_A02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A02.srt.aln.bam
LP6005677-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A03.srt.aln.bam
LP6005677-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A04.srt.aln.bam
LP6005677-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B01.srt.aln.bam
LP6005677-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B02.srt.aln.bam
LP6005677-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B04.srt.aln.bam
LP6005677-DNA_C03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_C03.srt.aln.bam
LP6005677-DNA_C04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_C04.srt.aln.bam
LP6005677-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D01.srt.aln.bam
LP6005677-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D03.srt.aln.bam
LP6005677-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D04.srt.aln.bam
LP6005677-DNA_E01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E01.srt.aln.bam
LP6005677-DNA_E03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E03.srt.aln.bam
LP6005677-DNA_E04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E04.srt.aln.bam
LP6005677-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_F01.srt.aln.bam
LP6005677-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_F03.srt.aln.bam
LP6005677-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_G01.srt.aln.bam
LP6005677-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_G03.srt.aln.bam
LP6005677-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_H03.srt.aln.bam
LP6007068-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6007068-DNA_A01.srt.aln.bam
LP6007069-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6007069-DNA_A01.srt.aln.bam
SS6004471/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004471.srt.aln.bam
SS6004477/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004477.srt.aln.bam
SS6004478/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004478.srt.aln.bam
SS6004480/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004480.srt.aln.bam
CHM13_kmer/net/eichler/vol27/projects/hprc/nobackups/analysis/kmer_fastcn/input/kmer/CHM13_v2.0/CHM13_v2.0.fa.gz
GRCh38_kmer/net/eichler/vol27/projects/hprc/nobackups/analysis/kmer_fastcn/input/kmer/GRCh38/GRCh38.fa.gz