Schema for SGDP copy number - SGDP copy number estimates
  Database: hs1    Primary Table: hub_3671779_AFR_Ju_hoan_North_LP6005441-DNA_A11_wssd Data last updated: 2022-04-20
Big Bed File Download: /gbdb/hs1/sgdpCopyNumber/LP6005441-DNA_A11_wssd.bb
Item Count: 1,179,227
The data is stored in the binary BigBed format.

Format description: Copy number track
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart165554721Start position of feature on chromosome
chromEnd165605880End position of feature on chromosome
name3Individual name
score0Score
strand++ or - for strand
thickStart0Coding region start
thickEnd0Coding region end
reserved0,0,205LightGray:0, DarkGray:1, Black:2, MediumBlue:3, RoyalBlue:4, Periwinkle:5, LightGreen:6, Yellow:7, Orange:8, Maroon:9, Red:10+
ID2.751452542643961Copy Number

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreservedID
chr116555472116560588030+000,0,2052.751452542643961
chr116560588016560699820+000,0,02.100208817246836
chr116560699816561940820+000,0,01.7669620942887387
chr116561940816562215430+000,0,2052.6531358289792104
chr116562215416562330230+000,0,2053.292366666719802
chr116562330216562830820+000,0,02.4867382103517097
chr116562830816563011620+000,0,01.8304848983427584
chr116563011616563267920+000,0,01.8099928590379155
chr116563267916563478420+000,0,01.8653919450552607
chr116563478416563668920+000,0,02.0331602883377515

AFR_Ju_hoan_North_LP6005441-DNA_A11 wssd CN (hub_3671779_AFR_Ju_hoan_North_LP6005441-DNA_A11_wssd) Track Description
 

Description

This track represents copy number estimates form the Simons Genome Diversity Project. Copy number is estimated over 500 bp windows of uniquely mappable sequence. Sequences are colored from cold to hot (0 - 120+) and exact copy can be found by clicking on the region of interest.

Code Availability

GitHub

Copy Number Key

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Credits

Please feel free to contact William Harvey or Mitchell Vollger with any questions and/or concerns regarding this track.

References

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science 2002

Pendleton AL, Shen F, Taravella AM, Emery S, Veeramah KR, Boyko AR, Kidd JM. Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication. BMC Biol. 2018

Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, et al. Global diversity, population stratification, and selection of human copy-number variation. Science. 2015

Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, et al. Diversity of human copy number. Science. 2010

Sample table

SampleRead file
LP6005441-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A01.srt.aln.bam
LP6005441-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A03.srt.aln.bam
LP6005441-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A04.srt.aln.bam
LP6005441-DNA_A05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A05.srt.aln.bam
LP6005441-DNA_A06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A06.srt.aln.bam
LP6005441-DNA_A08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A08.srt.aln.bam
LP6005441-DNA_A09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A09.srt.aln.bam
LP6005441-DNA_A10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A10.srt.aln.bam
LP6005441-DNA_A11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A11.srt.aln.bam
LP6005441-DNA_A12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_A12.srt.aln.bam
LP6005441-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B01.srt.aln.bam
LP6005441-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B02.srt.aln.bam
LP6005441-DNA_B03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B03.srt.aln.bam
LP6005441-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B04.srt.aln.bam
LP6005441-DNA_B05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B05.srt.aln.bam
LP6005441-DNA_B06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B06.srt.aln.bam
LP6005441-DNA_B07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B07.srt.aln.bam
LP6005441-DNA_B08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B08.srt.aln.bam
LP6005441-DNA_B09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B09.srt.aln.bam
LP6005441-DNA_B10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B10.srt.aln.bam
LP6005441-DNA_B11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B11.srt.aln.bam
LP6005441-DNA_B12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_B12.srt.aln.bam
LP6005441-DNA_C02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C02.srt.aln.bam
LP6005441-DNA_C03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C03.srt.aln.bam
LP6005441-DNA_C05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C05.srt.aln.bam
LP6005441-DNA_C06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C06.srt.aln.bam
LP6005441-DNA_C07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C07.srt.aln.bam
LP6005441-DNA_C08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C08.srt.aln.bam
LP6005441-DNA_C09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C09.srt.aln.bam
LP6005441-DNA_C10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C10.srt.aln.bam
LP6005441-DNA_C11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_C11.srt.aln.bam
LP6005441-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D01.srt.aln.bam
LP6005441-DNA_D02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D02.srt.aln.bam
LP6005441-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D03.srt.aln.bam
LP6005441-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D04.srt.aln.bam
LP6005441-DNA_D05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D05.srt.aln.bam
LP6005441-DNA_D06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D06.srt.aln.bam
LP6005441-DNA_D07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D07.srt.aln.bam
LP6005441-DNA_D08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D08.srt.aln.bam
LP6005441-DNA_D09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D09.srt.aln.bam
LP6005441-DNA_D10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D10.srt.aln.bam
LP6005441-DNA_D11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D11.srt.aln.bam
LP6005441-DNA_D12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_D12.srt.aln.bam
LP6005441-DNA_E02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E02.srt.aln.bam
LP6005441-DNA_E03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E03.srt.aln.bam
LP6005441-DNA_E05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E05.srt.aln.bam
LP6005441-DNA_E06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E06.srt.aln.bam
LP6005441-DNA_E07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E07.srt.aln.bam
LP6005441-DNA_E08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E08.srt.aln.bam
LP6005441-DNA_E09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E09.srt.aln.bam
LP6005441-DNA_E10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_E10.srt.aln.bam
LP6005441-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F01.srt.aln.bam
LP6005441-DNA_F02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F02.srt.aln.bam
LP6005441-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F03.srt.aln.bam
LP6005441-DNA_F04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F04.srt.aln.bam
LP6005441-DNA_F05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F05.srt.aln.bam
LP6005441-DNA_F06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F06.srt.aln.bam
LP6005441-DNA_F07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F07.srt.aln.bam
LP6005441-DNA_F08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F08.srt.aln.bam
LP6005441-DNA_F09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F09.srt.aln.bam
LP6005441-DNA_F10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F10.srt.aln.bam
LP6005441-DNA_F12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_F12.srt.aln.bam
LP6005441-DNA_G02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G02.srt.aln.bam
LP6005441-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G03.srt.aln.bam
LP6005441-DNA_G04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G04.srt.aln.bam
LP6005441-DNA_G05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G05.srt.aln.bam
LP6005441-DNA_G06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G06.srt.aln.bam
LP6005441-DNA_G07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G07.srt.aln.bam
LP6005441-DNA_G08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G08.srt.aln.bam
LP6005441-DNA_G09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G09.srt.aln.bam
LP6005441-DNA_G10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G10.srt.aln.bam
LP6005441-DNA_G11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G11.srt.aln.bam
LP6005441-DNA_G12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_G12.srt.aln.bam
LP6005441-DNA_H02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H02.srt.aln.bam
LP6005441-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H03.srt.aln.bam
LP6005441-DNA_H05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H05.srt.aln.bam
LP6005441-DNA_H06/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H06.srt.aln.bam
LP6005441-DNA_H07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H07.srt.aln.bam
LP6005441-DNA_H08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H08.srt.aln.bam
LP6005441-DNA_H09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H09.srt.aln.bam
LP6005441-DNA_H10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H10.srt.aln.bam
LP6005441-DNA_H11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H11.srt.aln.bam
LP6005441-DNA_H12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005441-DNA_H12.srt.aln.bam
LP6005442-DNA_A02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A02.srt.aln.bam
LP6005442-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A03.srt.aln.bam
LP6005442-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A04.srt.aln.bam
LP6005442-DNA_A08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A08.srt.aln.bam
LP6005442-DNA_A09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A09.srt.aln.bam
LP6005442-DNA_A10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A10.srt.aln.bam
LP6005442-DNA_A11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A11.srt.aln.bam
LP6005442-DNA_A12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_A12.srt.aln.bam
LP6005442-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B01.srt.aln.bam
LP6005442-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B02.srt.aln.bam
LP6005442-DNA_B03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B03.srt.aln.bam
LP6005442-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B04.srt.aln.bam
LP6005442-DNA_B08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B08.srt.aln.bam
LP6005442-DNA_B10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B10.srt.aln.bam
LP6005442-DNA_B11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B11.srt.aln.bam
LP6005442-DNA_B12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_B12.srt.aln.bam
LP6005442-DNA_C02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C02.srt.aln.bam
LP6005442-DNA_C04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C04.srt.aln.bam
LP6005442-DNA_C07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C07.srt.aln.bam
LP6005442-DNA_C10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C10.srt.aln.bam
LP6005442-DNA_C11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_C11.srt.aln.bam
LP6005442-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D01.srt.aln.bam
LP6005442-DNA_D02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D02.srt.aln.bam
LP6005442-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D03.srt.aln.bam
LP6005442-DNA_D08/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D08.srt.aln.bam
LP6005442-DNA_D09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D09.srt.aln.bam
LP6005442-DNA_D10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D10.srt.aln.bam
LP6005442-DNA_D11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_D11.srt.aln.bam
LP6005442-DNA_E04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E04.srt.aln.bam
LP6005442-DNA_E07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E07.srt.aln.bam
LP6005442-DNA_E10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E10.srt.aln.bam
LP6005442-DNA_E11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E11.srt.aln.bam
LP6005442-DNA_E12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_E12.srt.aln.bam
LP6005442-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F01.srt.aln.bam
LP6005442-DNA_F02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F02.srt.aln.bam
LP6005442-DNA_F04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F04.srt.aln.bam
LP6005442-DNA_F09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F09.srt.aln.bam
LP6005442-DNA_F10/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F10.srt.aln.bam
LP6005442-DNA_F11/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F11.srt.aln.bam
LP6005442-DNA_F12/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_F12.srt.aln.bam
LP6005442-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G01.srt.aln.bam
LP6005442-DNA_G02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G02.srt.aln.bam
LP6005442-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G03.srt.aln.bam
LP6005442-DNA_G04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G04.srt.aln.bam
LP6005442-DNA_G07/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G07.srt.aln.bam
LP6005442-DNA_G09/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005442-DNA_G09.srt.aln.bam
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LP6005592-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_D03.srt.aln.bam
LP6005592-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_D04.srt.aln.bam
LP6005592-DNA_E01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E01.srt.aln.bam
LP6005592-DNA_E02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E02.srt.aln.bam
LP6005592-DNA_E05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_E05.srt.aln.bam
LP6005592-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F01.srt.aln.bam
LP6005592-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F03.srt.aln.bam
LP6005592-DNA_F05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_F05.srt.aln.bam
LP6005592-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G01.srt.aln.bam
LP6005592-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G03.srt.aln.bam
LP6005592-DNA_G05/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_G05.srt.aln.bam
LP6005592-DNA_H01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_H01.srt.aln.bam
LP6005592-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005592-DNA_H03.srt.aln.bam
LP6005619-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_A01.srt.aln.bam
LP6005619-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_B01.srt.aln.bam
LP6005619-DNA_C01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_C01.srt.aln.bam
LP6005619-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005619-DNA_D01.srt.aln.bam
LP6005677-DNA_A02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A02.srt.aln.bam
LP6005677-DNA_A03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A03.srt.aln.bam
LP6005677-DNA_A04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_A04.srt.aln.bam
LP6005677-DNA_B01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B01.srt.aln.bam
LP6005677-DNA_B02/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B02.srt.aln.bam
LP6005677-DNA_B04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_B04.srt.aln.bam
LP6005677-DNA_C03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_C03.srt.aln.bam
LP6005677-DNA_C04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_C04.srt.aln.bam
LP6005677-DNA_D01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D01.srt.aln.bam
LP6005677-DNA_D03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D03.srt.aln.bam
LP6005677-DNA_D04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_D04.srt.aln.bam
LP6005677-DNA_E01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E01.srt.aln.bam
LP6005677-DNA_E03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E03.srt.aln.bam
LP6005677-DNA_E04/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_E04.srt.aln.bam
LP6005677-DNA_F01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_F01.srt.aln.bam
LP6005677-DNA_F03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_F03.srt.aln.bam
LP6005677-DNA_G01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_G01.srt.aln.bam
LP6005677-DNA_G03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_G03.srt.aln.bam
LP6005677-DNA_H03/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6005677-DNA_H03.srt.aln.bam
LP6007068-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6007068-DNA_A01.srt.aln.bam
LP6007069-DNA_A01/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/LP6007069-DNA_A01.srt.aln.bam
SS6004471/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004471.srt.aln.bam
SS6004477/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004477.srt.aln.bam
SS6004478/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004478.srt.aln.bam
SS6004480/net/eichler/vol28/projects/short_read_cohorts/nobackups/SGDP/SS6004480.srt.aln.bam
CHM13_kmer/net/eichler/vol27/projects/hprc/nobackups/analysis/kmer_fastcn/input/kmer/CHM13_v2.0/CHM13_v2.0.fa.gz
GRCh38_kmer/net/eichler/vol27/projects/hprc/nobackups/analysis/kmer_fastcn/input/kmer/GRCh38/GRCh38.fa.gz