Mouse Gene Nos1 (ENSMUST00000142742.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus nitric oxide synthase 1, neuronal (Nos1), mRNA. (from RefSeq NM_008712)
Gencode Transcript: ENSMUST00000142742.8
Gencode Gene: ENSMUSG00000029361.18
Transcript (Including UTRs)
   Position: mm10 chr5:117,841,850-117,958,840 Size: 116,991 Total Exon Count: 29 Strand: +
Coding Region
   Position: mm10 chr5:117,867,217-117,953,813 Size: 86,597 Coding Exon Count: 28 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:117,841,850-117,958,840)mRNA (may differ from genome)Protein (1429 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: NOS1_MOUSE
DESCRIPTION: RecName: Full=Nitric oxide synthase, brain; EC=1.14.13.39; AltName: Full=Constitutive NOS; AltName: Full=NC-NOS; AltName: Full=NOS type I; AltName: Full=Neuronal NOS; Short=N-NOS; Short=nNOS; AltName: Full=Peptidyl-cysteine S-nitrosylase NOS1; AltName: Full=bNOS;
FUNCTION: Produces nitric oxide (NO) which is a messenger molecule with diverse functions throughout the body. In the brain and peripheral nervous system, NO displays many properties of a neurotransmitter. Probably has nitrosylase activity and mediates cysteine S-nitrosylation of cytoplasmic target proteins such SRR. Isoform NNOS Mu may be an effector enzyme for the dystrophin complex.
CATALYTIC ACTIVITY: 2 L-arginine + 3 NADPH + 4 O(2) = 2 L- citrulline + 2 nitric oxide + 3 NADP(+) + 4 H(2)O.
COFACTOR: Heme group (By similarity).
COFACTOR: Binds 1 FAD (By similarity).
COFACTOR: Binds 1 FMN (By similarity).
COFACTOR: Tetrahydrobiopterin (BH4). May stabilize the dimeric form of the enzyme (By similarity).
ENZYME REGULATION: Stimulated by calcium/calmodulin. Inhibited by n-Nos-inhibiting protein (PIN) which may prevent the dimerization of the protein. Inhibited by NOSIP (By similarity).
SUBUNIT: Homodimer. Forms a ternary complex with CAPON and SYN1. Interacts with ZDHHC23. Interacts with NOSIP; which may impair its synaptic location (By similarity). Interacts with DLG4; the interaction possibly being prevented by the association between NOS1 and CAPON. Interacts with HTR4. Forms a ternary complex with CAPON and RASD1. Interacts with VAC14 (By similarity). Interacts with SLC6A4.
SUBCELLULAR LOCATION: Cell membrane, sarcolemma; Peripheral membrane protein. Cell projection, dendritic spine (By similarity). Note=In skeletal muscle, it is localized beneath the sarcolemma of fast-twitch muscle fiber by associating with the dystrophin glycoprotein complex. In neurons, enriched in dendritic spines (By similarity).
TISSUE SPECIFICITY: Widely expressed in the nervous system: expressed in cerebrum, olfactory bulb, hippocampus, midbrain, cerebellum, pons, medulla oblongata, and spinal cord. Also found in skeletal muscle, where it is localized beneath the sarcolemma of fast twitch muscle fibers, and in spleen, heart, kidney, and liver. N-NOS-1 and N-NOS-2 are found in all parts of the nervous system. NNOS beta and gamma occur in a region-specific manner in the brain and NNOS beta expression is developmentally regulated. NNOS Mu is only found in mature skeletal and cardiac muscles.
INDUCTION: By cholinergic agonists acting at inositol phosphate- linked muscarinic receptors in cardiac myocytes.
DOMAIN: The PDZ domain in the N-terminal part of the neuronal isoform participates in protein-protein interaction, and is responsible for targeting nNos to synaptic membranes in muscles. Mediates interaction with VAC14 (By similarity).
PTM: Ubiquitinated; mediated by STUB1/CHIP in the presence of Hsp70 and Hsp40 (in vitro) (By similarity).
DISEASE: Note=In MDX mice (mouse model of dystrophinopathy) the dystrophin complex is disrupted and nNOS is displaced from sarcolemma and accumulates in the cytosol.
SIMILARITY: Belongs to the NOS family.
SIMILARITY: Contains 1 FAD-binding FR-type domain.
SIMILARITY: Contains 1 flavodoxin-like domain.
SIMILARITY: Contains 1 PDZ (DHR) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -343.60806-0.426 Picture PostScript Text
3' UTR -1661.805027-0.331 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003097 - FAD-binding_1
IPR017927 - Fd_Rdtase_FAD-bd
IPR001094 - Flavdoxin
IPR008254 - Flavodoxin/NO_synth
IPR001709 - Flavoprot_Pyr_Nucl_cyt_Rdtase
IPR023173 - NADPH_Cyt_P450_Rdtase_dom3
IPR004030 - NO_synthase_oxygenase_dom
IPR026009 - NOS
IPR012144 - NOS_met
IPR001433 - OxRdtase_FAD/NAD-bd
IPR001478 - PDZ
IPR017938 - Riboflavin_synthase-like_b-brl

Pfam Domains:
PF00175 - Oxidoreductase NAD-binding domain
PF00258 - Flavodoxin
PF00595 - PDZ domain (Also known as DHR or GLGF)
PF00667 - FAD binding domain
PF02898 - Nitric oxide synthase, oxygenase domain

SCOP Domains:
50156 - PDZ domain-like
63380 - Riboflavin synthase domain-like
50729 - PH domain-like
52218 - Flavoproteins
52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
56512 - Nitric oxide (NO) synthase oxygenase domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2O60 - X-ray


ModBase Predicted Comparative 3D Structure on Q9Z0J4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003958 NADPH-hemoprotein reductase activity
GO:0004517 nitric-oxide synthase activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0010181 FMN binding
GO:0016491 oxidoreductase activity
GO:0017080 sodium channel regulator activity
GO:0019899 enzyme binding
GO:0020037 heme binding
GO:0042803 protein homodimerization activity
GO:0044325 ion channel binding
GO:0046870 cadmium ion binding
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
GO:0050661 NADP binding
GO:0051117 ATPase binding
GO:0051219 phosphoprotein binding
GO:0097110 scaffold protein binding

Biological Process:
GO:0001666 response to hypoxia
GO:0002028 regulation of sodium ion transport
GO:0006527 arginine catabolic process
GO:0006809 nitric oxide biosynthetic process
GO:0006941 striated muscle contraction
GO:0007263 nitric oxide mediated signal transduction
GO:0008016 regulation of heart contraction
GO:0008285 negative regulation of cell proliferation
GO:0009408 response to heat
GO:0018119 peptidyl-cysteine S-nitrosylation
GO:0031284 positive regulation of guanylate cyclase activity
GO:0033137 negative regulation of peptidyl-serine phosphorylation
GO:0033555 multicellular organismal response to stress
GO:0035066 positive regulation of histone acetylation
GO:0042311 vasodilation
GO:0042738 exogenous drug catabolic process
GO:0043066 negative regulation of apoptotic process
GO:0043267 negative regulation of potassium ion transport
GO:0043434 response to peptide hormone
GO:0043627 response to estrogen
GO:0045184 establishment of protein localization
GO:0045776 negative regulation of blood pressure
GO:0045822 negative regulation of heart contraction
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045906 negative regulation of vasoconstriction
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046676 negative regulation of insulin secretion
GO:0048148 behavioral response to cocaine
GO:0050767 regulation of neurogenesis
GO:0051346 negative regulation of hydrolase activity
GO:0051481 negative regulation of cytosolic calcium ion concentration
GO:0051612 negative regulation of serotonin uptake
GO:0051926 negative regulation of calcium ion transport
GO:0051930 regulation of sensory perception of pain
GO:0055114 oxidation-reduction process
GO:0071260 cellular response to mechanical stimulus
GO:0071363 cellular response to growth factor stimulus
GO:0071872 cellular response to epinephrine stimulus
GO:0098735 positive regulation of the force of heart contraction
GO:0098924 retrograde trans-synaptic signaling by nitric oxide
GO:1900273 positive regulation of long-term synaptic potentiation
GO:1901216 positive regulation of neuron death
GO:1902307 positive regulation of sodium ion transmembrane transport

Cellular Component:
GO:0001917 photoreceptor inner segment
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0012506 vesicle membrane
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016529 sarcoplasmic reticulum
GO:0030018 Z disc
GO:0030315 T-tubule
GO:0030425 dendrite
GO:0031965 nuclear membrane
GO:0032991 macromolecular complex
GO:0033017 sarcoplasmic reticulum membrane
GO:0042383 sarcolemma
GO:0042582 azurophil granule
GO:0042995 cell projection
GO:0043197 dendritic spine
GO:0045121 membrane raft
GO:0045202 synapse
GO:0048471 perinuclear region of cytoplasm
GO:0005901 caveola


-  Descriptions from all associated GenBank mRNAs
  U50718 - Mus musculus nitric oxide synthase (NOS) mRNA, alternatively spliced exon 1.
BC066101 - Mus musculus cDNA clone IMAGE:30533636, containing frame-shift errors.
BC083183 - Mus musculus cDNA clone IMAGE:30533636, containing frame-shift errors.
D14552 - Mus musculus domesticus mRNA for nitric oxide synthase, complete cds.
BC167235 - Synthetic construct Mus musculus clone IMAGE:100068135, MGC:195752 nitric oxide synthase 1, neuronal (Nos1) mRNA, encodes complete protein.
AK141904 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130059D05 product:nitric oxide synthase 1, neuronal, full insert sequence.
AB350965 - Mus musculus non-coding RNA, oocyte_piRNA1781, complete sequence.
AB350387 - Mus musculus non-coding RNA, oocyte_piRNA1203, complete sequence.
AK009163 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310005C01 product:unclassifiable, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu00330 - Arginine and proline metabolism
mmu01100 - Metabolic pathways
mmu04020 - Calcium signaling pathway
mmu04145 - Phagosome
mmu04730 - Long-term depression
mmu04970 - Salivary secretion
mmu05010 - Alzheimer's disease
mmu05014 - Amyotrophic lateral sclerosis (ALS)

BioCyc Knowledge Library
PWY-4983 - citrulline-nitric oxide cycle
PWY-5004 - superpathway of citrulline metabolism

Reactome (by CSHL, EBI, and GO)

Protein Q9Z0J4 (Reactome details) participates in the following event(s):

R-MMU-5617178 ATP2B4 binds to NOS1, inhibiting it
R-MMU-418436 Nitric Oxide Synthase (NOS) produces Nitric Oxide (NO)
R-MMU-5578775 Ion homeostasis
R-MMU-5576891 Cardiac conduction
R-MMU-392154 Nitric oxide stimulates guanylate cyclase
R-MMU-1222556 ROS, RNS production in phagocytes
R-MMU-397014 Muscle contraction
R-MMU-418346 Platelet homeostasis
R-MMU-168249 Innate Immune System
R-MMU-109582 Hemostasis
R-MMU-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: NM_008712, NOS1_MOUSE, Q3UR10, Q64208, Q9Z0J4, uc008zfy.1, uc008zfy.2, uc008zfy.3, uc008zfy.4
UCSC ID: uc008zfy.4
RefSeq Accession: NM_008712
Protein: Q9Z0J4 (aka NOS1_MOUSE)
CCDS: CCDS19606.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.