Human Gene TBX19 (ENST00000367821.8) from GENCODE V44
  Description: Homo sapiens T-box transcription factor 19 (TBX19), mRNA. (from RefSeq NM_005149)
RefSeq Summary (NM_005149): This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. Mutations in this gene were found in patients with isolated deficiency of pituitary POMC-derived ACTH, suggesting an essential role for this gene in differentiation of the pituitary POMC lineage. ACTH deficiency is characterized by adrenal insufficiency symptoms such as weight loss, lack of appetite (anorexia), weakness, nausea, vomiting, and low blood pressure. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000367821.8
Gencode Gene: ENSG00000143178.13
Transcript (Including UTRs)
   Position: hg38 chr1:168,280,877-168,314,426 Size: 33,550 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg38 chr1:168,281,091-168,313,002 Size: 31,912 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:168,280,877-168,314,426)mRNA (may differ from genome)Protein (448 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TBX19_HUMAN
DESCRIPTION: RecName: Full=T-box transcription factor TBX19; Short=T-box protein 19; AltName: Full=T-box factor, pituitary;
FUNCTION: Transcriptional regulator involved in developmental processes. Can activate POMC gene expression and repress the alpha glycoprotein subunit and thyroid-stimulating hormone beta promoters.
SUBCELLULAR LOCATION: Nucleus (Potential).
DISEASE: Defects in TBX19 are a cause of ACTH deficiency isolated (IAD) [MIM:201400]. ACTH deficiency is characterized by adrenal insufficiency symptoms such as weight loss, lack of appetite (anorexia), weakness, nausea, vomiting, and low blood pressure (hypotension). The pituitary hormone ACTH is decreased or absent, and other cortisol and other steroid hormone levels in the blood are abnormally low.
SIMILARITY: Contains 1 T-box DNA-binding domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/TBX19";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TBX19
Diseases sorted by gene-association score: adrenocorticotropic hormone deficiency* (1574), acth deficiency* (560), late-onset isolated acth deficiency (18), lymphocytic hypophysitis (8), pituitary adenoma, acth-secreting (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.96 RPKM in Pituitary
Total median expression: 126.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.40214-0.296 Picture PostScript Text
3' UTR -398.501424-0.280 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008967 - p53-like_TF_DNA-bd
IPR002070 - TF_Brachyury
IPR001699 - TF_T-box
IPR018186 - TF_T-box_CS

Pfam Domains:
PF00907 - T-box

ModBase Predicted Comparative 3D Structure on O60806
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI Ensembl   
Protein Sequence Protein Sequence   
Alignment Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001158 enhancer sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0009653 anatomical structure morphogenesis
GO:0021983 pituitary gland development
GO:0042127 regulation of cell proliferation
GO:0045165 cell fate commitment
GO:0045595 regulation of cell differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  AK091404 - Homo sapiens cDNA FLJ34085 fis, clone FCBBF3004842, highly similar to TBX19 PROTEIN.
AX746960 - Sequence 485 from Patent EP1308459.
AJ010277 - Homo sapiens mRNA for TBX19 protein.
BC093666 - Homo sapiens T-box 19, mRNA (cDNA clone MGC:120701 IMAGE:7939511), complete cds.
BC093664 - Homo sapiens T-box 19, mRNA (cDNA clone MGC:120699 IMAGE:7939509), complete cds.
EU446671 - Synthetic construct Homo sapiens clone IMAGE:100070258; IMAGE:100011880; FLH258751.01L T-box 19 (TBX19) gene, encodes complete protein.
JD506966 - Sequence 487990 from Patent EP1572962.
AK129813 - Homo sapiens cDNA FLJ26302 fis, clone DMC07804, highly similar to T-box transcription factor TBX19.
AK091862 - Homo sapiens cDNA FLJ34543 fis, clone HLUNG2008875.
AX747228 - Sequence 753 from Patent EP1308459.
JD251679 - Sequence 232703 from Patent EP1572962.
JD467784 - Sequence 448808 from Patent EP1572962.
JD197382 - Sequence 178406 from Patent EP1572962.
JD359431 - Sequence 340455 from Patent EP1572962.
JD300300 - Sequence 281324 from Patent EP1572962.
JD293038 - Sequence 274062 from Patent EP1572962.
JD224402 - Sequence 205426 from Patent EP1572962.
JD153804 - Sequence 134828 from Patent EP1572962.
JD352136 - Sequence 333160 from Patent EP1572962.
JD503119 - Sequence 484143 from Patent EP1572962.
JD410737 - Sequence 391761 from Patent EP1572962.
JD044846 - Sequence 25870 from Patent EP1572962.
JD167955 - Sequence 148979 from Patent EP1572962.
JD478406 - Sequence 459430 from Patent EP1572962.
JD334943 - Sequence 315967 from Patent EP1572962.
JD370752 - Sequence 351776 from Patent EP1572962.
JD346174 - Sequence 327198 from Patent EP1572962.
JD082640 - Sequence 63664 from Patent EP1572962.
JD082964 - Sequence 63988 from Patent EP1572962.
JD471831 - Sequence 452855 from Patent EP1572962.
JD188873 - Sequence 169897 from Patent EP1572962.
JD117946 - Sequence 98970 from Patent EP1572962.
JD094067 - Sequence 75091 from Patent EP1572962.
JD112291 - Sequence 93315 from Patent EP1572962.
JD497442 - Sequence 478466 from Patent EP1572962.
JD541717 - Sequence 522741 from Patent EP1572962.
JD459656 - Sequence 440680 from Patent EP1572962.
JD061536 - Sequence 42560 from Patent EP1572962.
JD351880 - Sequence 332904 from Patent EP1572962.
JD523805 - Sequence 504829 from Patent EP1572962.
JD141107 - Sequence 122131 from Patent EP1572962.
JD201558 - Sequence 182582 from Patent EP1572962.
JD431336 - Sequence 412360 from Patent EP1572962.
JD292018 - Sequence 273042 from Patent EP1572962.
JD267634 - Sequence 248658 from Patent EP1572962.
JD448614 - Sequence 429638 from Patent EP1572962.
JD352612 - Sequence 333636 from Patent EP1572962.
JD446925 - Sequence 427949 from Patent EP1572962.
JD180323 - Sequence 161347 from Patent EP1572962.
JD341856 - Sequence 322880 from Patent EP1572962.
JD510985 - Sequence 492009 from Patent EP1572962.
JD088887 - Sequence 69911 from Patent EP1572962.
JD268518 - Sequence 249542 from Patent EP1572962.
JD184238 - Sequence 165262 from Patent EP1572962.
JD093137 - Sequence 74161 from Patent EP1572962.
JD561600 - Sequence 542624 from Patent EP1572962.
JD282757 - Sequence 263781 from Patent EP1572962.
JD275568 - Sequence 256592 from Patent EP1572962.
JD092104 - Sequence 73128 from Patent EP1572962.
JD518097 - Sequence 499121 from Patent EP1572962.
JD469475 - Sequence 450499 from Patent EP1572962.
JD092108 - Sequence 73132 from Patent EP1572962.
JD099610 - Sequence 80634 from Patent EP1572962.
JD417957 - Sequence 398981 from Patent EP1572962.
JD162465 - Sequence 143489 from Patent EP1572962.
JD143035 - Sequence 124059 from Patent EP1572962.
JD380072 - Sequence 361096 from Patent EP1572962.
JD501744 - Sequence 482768 from Patent EP1572962.
JD549465 - Sequence 530489 from Patent EP1572962.
JD126615 - Sequence 107639 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000367821.1, ENST00000367821.2, ENST00000367821.3, ENST00000367821.4, ENST00000367821.5, ENST00000367821.6, ENST00000367821.7, NM_005149, O60806, Q52M53, TBX19_HUMAN, TPIT, uc001gfl.1, uc001gfl.2, uc001gfl.3, uc001gfl.4, uc001gfl.5, uc001gfl.6
UCSC ID: ENST00000367821.8
RefSeq Accession: NM_005149
Protein: O60806 (aka TBX19_HUMAN or TX19_HUMAN)
CCDS: CCDS1272.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.