Human Gene EXOC3-AS1 (ENST00000623673.1) from GENCODE V44
  Description: Homo sapiens EXOC3 antisense RNA 1 (EXOC3-AS1), long non-coding RNA. (from RefSeq NR_126522)
Gencode Transcript: ENST00000623673.1
Gencode Gene: ENSG00000221990.5
Transcript (Including UTRs)
   Position: hg38 chr5:441,498-443,160 Size: 1,663 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:441,498-443,160)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeLynxPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.44 RPKM in Pituitary
Total median expression: 128.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC014011 - Homo sapiens hypothetical protein BC014011, mRNA (cDNA clone IMAGE:3959980), partial cds.
JD210507 - Sequence 191531 from Patent EP1572962.
JD216632 - Sequence 197656 from Patent EP1572962.
JD476031 - Sequence 457055 from Patent EP1572962.
JD076227 - Sequence 57251 from Patent EP1572962.
JD179196 - Sequence 160220 from Patent EP1572962.
JD565673 - Sequence 546697 from Patent EP1572962.
JD481498 - Sequence 462522 from Patent EP1572962.
BC029796 - Homo sapiens hypothetical protein BC014011, mRNA (cDNA clone MGC:35369 IMAGE:5183143), complete cds.
JD315395 - Sequence 296419 from Patent EP1572962.
JD390215 - Sequence 371239 from Patent EP1572962.
JD468985 - Sequence 450009 from Patent EP1572962.
JD103648 - Sequence 84672 from Patent EP1572962.
JD214541 - Sequence 195565 from Patent EP1572962.
JD469213 - Sequence 450237 from Patent EP1572962.
JD146394 - Sequence 127418 from Patent EP1572962.
JD338828 - Sequence 319852 from Patent EP1572962.
JD196635 - Sequence 177659 from Patent EP1572962.
JD502390 - Sequence 483414 from Patent EP1572962.
JD255457 - Sequence 236481 from Patent EP1572962.
JD227284 - Sequence 208308 from Patent EP1572962.
KJ895311 - Synthetic construct Homo sapiens clone ccsbBroadEn_04705 C5orf55 gene, encodes complete protein.
CU688746 - Synthetic construct Homo sapiens gateway clone IMAGE:100017918 5' read LOC116349 mRNA.
JD525253 - Sequence 506277 from Patent EP1572962.
JD547937 - Sequence 528961 from Patent EP1572962.
JD229898 - Sequence 210922 from Patent EP1572962.
JD174554 - Sequence 155578 from Patent EP1572962.
JD336990 - Sequence 318014 from Patent EP1572962.
JD124351 - Sequence 105375 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_126522, uc010ita.1, uc010ita.2, uc010ita.3, uc010ita.4
UCSC ID: ENST00000623673.1
RefSeq Accession: NR_126522

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.