S. cerevisiae Gene RPL41A (YDL184C)
  Description: Ribosomal protein L47 of the large (60S) ribosomal subunit, identical to Rpl41Bp and has similarity to rat L41 ribosomal protein comprised of only 25 amino acids rpl41a rpl41b double null mutant is viable
Transcript (Including UTRs)
   Position: sacCer3 chrIV:130,407-130,484 Size: 78 Total Exon Count: 1 Strand: -
Coding Region
   Position: sacCer3 chrIV:130,407-130,484 Size: 78 Coding Exon Count: 1 

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GO AnnotationsOther NamesMethods
Data last updated at UCSC: 2011-08-29

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrIV:130,407-130,484)mRNAProtein (25 aa)
Gene SorterGenome BrowserOther Species FASTAAlphaFoldSGDUniProtKB

-  Comments and Description Text from UniProtKB
  ID: RL41A_YEAST
DESCRIPTION: RecName: Full=60S ribosomal protein L41-A; AltName: Full=L47; AltName: Full=YL41;
SUBUNIT: Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).
SUBCELLULAR LOCATION: Cytoplasm.
MASS SPECTROMETRY: Mass=3335.103; Method=Electrospray; Range=1-25; Note=Monoisotopic mass; Source=PubMed:11983894;
MISCELLANEOUS: Present with 11900 molecules/cell in log phase SD medium.
MISCELLANEOUS: There are 2 genes for L41 in yeast.
SIMILARITY: Belongs to the ribosomal protein L41e family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007836 - Ribosomal_L41

Pfam Domains:
PF05162 - Ribosomal protein L41

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3IZS - EM 3U5E - X-ray 3U5I - X-ray


ModBase Predicted Comparative 3D Structure on P0CX86
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanMouseRatZebrafishD. melanogasterC. elegans
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003735 structural constituent of ribosome

Biological Process:
GO:0002181 cytoplasmic translation
GO:0006412 translation

Cellular Component:
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit


-  Other Names for This Gene
  UCSC ID: YDL184C
Protein: P0CX86 (aka RL41A_YEAST)

-  SGD Genes Methods, Credits, and Data Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.