Description: Homo sapiens ubiquitin specific peptidase 46 (USP46), transcript variant 1, mRNA. RefSeq Summary (NM_022832): Modification of cellular proteins by ubiquitin is an essential regulatory mechanism controlled by the coordinated action of multiple ubiquitin-conjugating and deubiquitinating enzymes. USP46 belongs to a large family of cysteine proteases that function as deubiquitinating enzymes (Quesada et al., 2004 [PubMed 14715245]).[supplied by OMIM, Jun 2009]. Transcript (Including UTRs) Position: hg19 chr4:53,457,127-53,525,502 Size: 68,376 Total Exon Count: 9 Strand: - Coding Region Position: hg19 chr4:53,463,806-53,525,317 Size: 61,512 Coding Exon Count: 9
ID:UBP46_HUMAN DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 46; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 46; AltName: Full=Ubiquitin thioesterase 46; AltName: Full=Ubiquitin-specific-processing protease 46; FUNCTION: Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action. May act by mediating the deubiquitination of GAD1/GAD67. Has almost no deubiquitinating activity by itself and requires the interaction with WDR48 to have a high activity. Not involved in deubiquitination of monoubiquitinated FANCD2. CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal). SUBUNIT: Interacts with WDR48. TISSUE SPECIFICITY: Broadly expressed. SIMILARITY: Belongs to the peptidase C19 family. USP12/USP46 subfamily.
To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): USP46 CDC HuGE Published Literature: USP46 Positive Disease Associations: Biochemical measures Related Studies:
Biochemical measures Zemunik ,et al. 2009, Genome-wide association study of biochemical traits in Korcula Island, Croatia, Croatian medical journal 2009 50- 1 : 23-33.
[PubMed 19260141]
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on P62068
Front
Top
Side
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.