Human Gene TMEM44 (uc003fuc.3)
  Description: Homo sapiens transmembrane protein 44 (TMEM44), transcript variant 3, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr3:194,308,402-194,338,374 Size: 29,973 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr3:194,309,258-194,336,405 Size: 27,148 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:194,308,402-194,338,374)mRNA (may differ from genome)Protein (160 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIPubMed
UniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TMEM44
CDC HuGE Published Literature: TMEM44
Positive Disease Associations: Heart Rate
Related Studies:
  1. Heart Rate
    Fabio Marroni et al. Circulation. Cardiovascular genetics 2009, A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project., Circulation. Cardiovascular genetics. [PubMed 20031603]
    Our results suggested an association between the RR interval and GPR133 and confirmed an association between the QT interval and NOS1AP.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.78 RPKM in Colon - Transverse
Total median expression: 157.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -225.00568-0.396 Picture PostScript Text
3' UTR -305.10856-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q96I73
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ903597 - Synthetic construct Homo sapiens clone ccsbBroadEn_12991 TMEM44 gene, encodes complete protein.
KJ906399 - Synthetic construct Homo sapiens clone ccsbBroadEn_16069 TMEM44 gene, encodes complete protein.
BC034353 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone IMAGE:4747146), complete cds.
BC007772 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone IMAGE:4139775), complete cds.
AL833026 - Homo sapiens mRNA; cDNA DKFZp666F238 (from clone DKFZp666F238).
BX647418 - Homo sapiens mRNA; cDNA DKFZp686O18124 (from clone DKFZp686O18124).
BC014883 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone MGC:10167 IMAGE:3907191), complete cds.
BC111485 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone MGC:131692 IMAGE:5767916), complete cds.
AK126914 - Homo sapiens cDNA FLJ44966 fis, clone BRAWH2016305.
JD266633 - Sequence 247657 from Patent EP1572962.
JD449917 - Sequence 430941 from Patent EP1572962.
JD462044 - Sequence 443068 from Patent EP1572962.
JD462043 - Sequence 443067 from Patent EP1572962.
JD396033 - Sequence 377057 from Patent EP1572962.
JD065021 - Sequence 46045 from Patent EP1572962.
JD489475 - Sequence 470499 from Patent EP1572962.
JD087534 - Sequence 68558 from Patent EP1572962.
JD164309 - Sequence 145333 from Patent EP1572962.
JD248120 - Sequence 229144 from Patent EP1572962.
BC130297 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone MGC:163169 IMAGE:40146328), complete cds.
BC144158 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone MGC:177695 IMAGE:9052678), complete cds.
BC144159 - Homo sapiens transmembrane protein 44, mRNA (cDNA clone MGC:177696 IMAGE:9052679), complete cds.
JD164962 - Sequence 145986 from Patent EP1572962.
JD402790 - Sequence 383814 from Patent EP1572962.
JD100085 - Sequence 81109 from Patent EP1572962.
JD369929 - Sequence 350953 from Patent EP1572962.
AY303778 - Homo sapiens unknown mRNA.
AY597813 - Homo sapiens chromosome 3 hypothetical protein mRNA, complete cds.
CU689860 - Synthetic construct Homo sapiens gateway clone IMAGE:100017960 5' read TMEM44 mRNA.
HQ258241 - Synthetic construct Homo sapiens clone IMAGE:100072550 transmembrane protein 44 (TMEM44), transcript variant 1 (TMEM44) gene, encodes complete protein.
JD321878 - Sequence 302902 from Patent EP1572962.
JD420429 - Sequence 401453 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL833026, DKFZp666F238, NM_001011655, NP_001011655, Q96I73, Q96I73_HUMAN
UCSC ID: uc003fuc.3
RefSeq Accession: NM_001011655
Protein: Q96I73

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AL833026.1
exon count: 5CDS single in 3' UTR: no RNA size: 1921
ORF size: 483CDS single in intron: no Alignment % ID: 99.79
txCdsPredict score: 930.50frame shift in genome: no % Coverage: 98.85
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 376# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.