Human Gene TMEM219 (uc010bzk.1)
  Description: Homo sapiens transmembrane protein 219 (TMEM219), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr16:29,973,351-29,984,373 Size: 11,023 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr16:29,974,465-29,982,866 Size: 8,402 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:29,973,351-29,984,373)mRNA (may differ from genome)Protein (240 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtPubMedReactomeTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TM219_HUMAN
DESCRIPTION: RecName: Full=Insulin-like growth factor-binding protein 3 receptor; Short=IGFBP-3R; AltName: Full=Transmembrane protein 219; Flags: Precursor;
FUNCTION: Cell death receptor specific for IGFBP3, may mediate caspase-8-dependent apoptosis upon ligand binding.
SUBUNIT: Interacts with IGFBP3. Interacts with CASP8.
SUBCELLULAR LOCATION: Cell membrane; Single-pass membrane protein.
TISSUE SPECIFICITY: Widely expressed in normal tissues but suppressed in prostate and breast tumor.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 80.28 RPKM in Testis
Total median expression: 1743.13 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -79.70140-0.569 Picture PostScript Text
3' UTR -37.70136-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF14940 - Transmembrane 219

ModBase Predicted Comparative 3D Structure on Q86XT9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0006915 apoptotic process
GO:0042981 regulation of apoptotic process

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC050051 - Homo sapiens transmembrane protein 219, mRNA (cDNA clone MGC:48344 IMAGE:5278133), complete cds.
HM005516 - Homo sapiens clone HTL-T-203 testicular tissue protein Li 203 mRNA, complete cds.
BC031217 - Homo sapiens hypothetical protein BC017488, mRNA (cDNA clone IMAGE:5287069).
JD525480 - Sequence 506504 from Patent EP1572962.
FJ748884 - Homo sapiens insulin-like growth factor binding protein-3 receptor mRNA, complete cds.
BC017488 - Homo sapiens transmembrane protein 219, mRNA (cDNA clone IMAGE:3538007), partial cds.
JD506902 - Sequence 487926 from Patent EP1572962.
JD511390 - Sequence 492414 from Patent EP1572962.
JD434025 - Sequence 415049 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q86XT9 (Reactome details) participates in the following event(s):

R-HSA-6800035 IGFBP3 binds TMEM219
R-HSA-6803211 TP53 Regulates Transcription of Death Receptors and Ligands
R-HSA-5633008 TP53 Regulates Transcription of Cell Death Genes
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: D5FK14, NM_001083613, NP_919256, Q86XT9, Q8WVV8, TM219_HUMAN
UCSC ID: uc010bzk.1
RefSeq Accession: NM_001083613
Protein: Q86XT9 (aka TM219_HUMAN)
CCDS: CCDS42145.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001083613.1
exon count: 6CDS single in 3' UTR: no RNA size: 1019
ORF size: 723CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1646.00frame shift in genome: no % Coverage: 98.04
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.