Human Gene TEAD4 (uc010sej.2)
  Description: Homo sapiens TEA domain family member 4 (TEAD4), transcript variant 1, mRNA.
RefSeq Summary (NM_201443): This gene product is a member of the transcriptional enhancer factor (TEF) family of transcription factors, which contain the TEA/ATTS DNA-binding domain. It is preferentially expressed in the skeletal muscle, and binds to the M-CAT regulatory element found in promoters of muscle-specific genes to direct their gene expression. Alternatively spliced transcripts encoding distinct isoforms, some of which are translated through the use of a non-AUG (UUG) initiation codon, have been described for this gene. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr12:3,068,478-3,149,842 Size: 81,365 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr12:3,103,933-3,149,644 Size: 45,712 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:3,068,478-3,149,842)mRNA (may differ from genome)Protein (434 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TEAD4_HUMAN
DESCRIPTION: RecName: Full=Transcriptional enhancer factor TEF-3; AltName: Full=TEA domain family member 4; Short=TEAD-4; AltName: Full=Transcription factor 13-like 1; AltName: Full=Transcription factor RTEF-1;
FUNCTION: Transcription factor which plays a key role in the Hippo signaling pathway, a pathway involved in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein MST1/MST2, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Acts by mediating gene expression of YAP1 and WWTR1/TAZ, thereby regulating cell proliferation, migration and epithelial mesenchymal transition (EMT) induction. Binds specifically and non-cooperatively to the Sph and GT-IIC 'enhansons' (5'-GTGGAATGT-3') and activates transcription. Binds to the M-CAT motif.
SUBUNIT: Interacts with YAP1 and WWTR1/TAZ.
INTERACTION: Q9GZV5:WWTR1; NbExp=2; IntAct=EBI-747736, EBI-747743;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Preferentially expressed in skeletal muscle. Lower levels in pancreas, placenta, and heart.
SIMILARITY: Contains 1 TEA DNA-binding domain.
SEQUENCE CAUTION: Sequence=CAA64212.2; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical ATA isoleucine codon;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TEAD4
Diseases sorted by gene-association score: narcolepsy (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.71 RPKM in Muscle - Skeletal
Total median expression: 211.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -129.53292-0.444 Picture PostScript Text
3' UTR -67.00198-0.338 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000818 - TEA/ATTS
IPR016361 - TEF

Pfam Domains:
PF01285 - TEA/ATTS domain family

ModBase Predicted Comparative 3D Structure on Q15561
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001085 RNA polymerase II transcription factor binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding

Biological Process:
GO:0001501 skeletal system development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007517 muscle organ development
GO:0035329 hippo signaling
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048568 embryonic organ development

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005667 transcription factor complex


-  Descriptions from all associated GenBank mRNAs
  AY101179 - Homo sapiens related transcription enhancer factor 1B mRNA, complete cds.
BC015497 - Homo sapiens TEA domain family member 4, mRNA (cDNA clone MGC:9014 IMAGE:3913870), complete cds.
AK222947 - Homo sapiens mRNA for TEA domain family member 4 isoform 1 variant, clone: HRC10521.
U63824 - Human transcription factor RTEF-1 (RTEF1) mRNA, complete cds.
BX640921 - Homo sapiens mRNA; cDNA DKFZp686G19178 (from clone DKFZp686G19178).
EU446502 - Synthetic construct Homo sapiens clone IMAGE:100070237; IMAGE:100011711; FLH258194.01L TEA domain family member 4 (TEAD4) gene, encodes complete protein.
X94438 - Homo sapiens mRNA for TEF-3 protein.
CU677317 - Synthetic construct Homo sapiens gateway clone IMAGE:100019089 5' read TEAD4 mRNA.
KU178354 - Homo sapiens TEA domain family member 4 isoform 1 (TEAD4) mRNA, partial cds.
KU178355 - Homo sapiens TEA domain family member 4 isoform 2 (TEAD4) mRNA, complete cds, alternatively spliced.
KU178356 - Homo sapiens TEA domain family member 4 isoform 3 (TEAD4) mRNA, partial cds, alternatively spliced.
KJ897651 - Synthetic construct Homo sapiens clone ccsbBroadEn_07045 TEAD4 gene, encodes complete protein.
AB528987 - Synthetic construct DNA, clone: pF1KE0919, Homo sapiens TEAD4 gene for TEA domain family member 4, without stop codon, in Flexi system.
JD058433 - Sequence 39457 from Patent EP1572962.
JD215295 - Sequence 196319 from Patent EP1572962.
JD419789 - Sequence 400813 from Patent EP1572962.
JD081223 - Sequence 62247 from Patent EP1572962.
JD417525 - Sequence 398549 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15561 (Reactome details) participates in the following event(s):

R-HSA-8871265 YAP1 binds TEAD4
R-HSA-2032781 WWTR1 (TAZ) binds TEAD
R-HSA-8951695 TEADs:YAP1 binds CTGF gene
R-HSA-8951676 RUNX3 binds TEADs and YAP1
R-HSA-2032785 YAP1- and WWTR1 (TAZ)-stimulated gene expression
R-HSA-212436 Generic Transcription Pathway
R-HSA-8951671 RUNX3 regulates YAP1-mediated transcription
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-8878159 Transcriptional regulation by RUNX3
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: NM_003213, NM_201443, NP_958851, Q15561, Q6MZR9, Q92883, Q96BK2, RTEF1, TCF13L1, TEAD4_HUMAN, TEF3
UCSC ID: uc010sej.2
RefSeq Accession: NM_201443
Protein: Q15561 (aka TEAD4_HUMAN or TEA4_HUMAN)
CCDS: CCDS31729.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_003213.3
exon count: 13CDS single in 3' UTR: no RNA size: 1798
ORF size: 1305CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2094.00frame shift in genome: no % Coverage: 99.83
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.