Human Gene RIPK2 (uc003yee.3)
  Description: Homo sapiens receptor-interacting serine-threonine kinase 2 (RIPK2), mRNA.
RefSeq Summary (NM_003821): This gene encodes a member of the receptor-interacting protein (RIP) family of serine/threonine protein kinases. The encoded protein contains a C-terminal caspase activation and recruitment domain (CARD), and is a component of signaling complexes in both the innate and adaptive immune pathways. It is a potent activator of NF-kappaB and inducer of apoptosis in response to various stimuli. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr8:90,769,975-90,803,292 Size: 33,318 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr8:90,770,289-90,802,644 Size: 32,356 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:90,769,975-90,803,292)mRNA (may differ from genome)Protein (540 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RIPK2_HUMAN
DESCRIPTION: RecName: Full=Receptor-interacting serine/threonine-protein kinase 2; EC=2.7.11.1; AltName: Full=CARD-containing interleukin-1 beta-converting enzyme-associated kinase; Short=CARD-containing IL-1 beta ICE-kinase; AltName: Full=RIP-like-interacting CLARP kinase; AltName: Full=Receptor-interacting protein 2; Short=RIP-2; AltName: Full=Tyrosine-protein kinase RIPK2; EC=2.7.10.2;
FUNCTION: Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. Once recruited, RIPK2 autophosphorylates and undergoes 'Lys-63'-linked polyubiquitination by E3 ubiquitin ligases BIRC2 and BIRC3. The polyubiquitinated protein mediates the recruitment of MAP3K7/TAK1 to IKBKG/NEMO and induces 'Lys-63'-linked polyubiquitination of IKBKG/NEMO and subsequent activation of IKBKB/IKKB. In turn, NF-kappa-B is released from NF-kappa-B inhibitors and translocates into the nucleus where it activates the transcription of hundreds of genes involved in immune response, growth control, or protection against apoptosis. Plays also a role during engagement of the T-cell receptor (TCR) in promoting BCL10 phosphorylation and subsequent NF-kappa-B activation.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
SUBUNIT: Binds to CFLAR/CLARP and CASP1 via their CARD domains. Binds to BIRC3/c-IAP1 and BIRC2/c-IAP2, TRAF1, TRAF2, TRAF5 and TRAF6. May be a component of both the TNFRSF1A and TNRFSF5/CD40 receptor complex. Interacts with NOD1 and NOD2. Interacts with MAP3K4; this interaction sequesters RIPK2 from the NOD2 signaling pathway. Interacts with IKBKG/NEMO. The polyubiquitinated protein interacts with MAP3K7/TAK1. Interacts with XIAP/BIRC4.
INTERACTION: Q13490:BIRC2; NbExp=3; IntAct=EBI-358522, EBI-514538; Q13489:BIRC3; NbExp=3; IntAct=EBI-358522, EBI-517709; Q7Z434:MAVS; NbExp=3; IntAct=EBI-358522, EBI-995373;
SUBCELLULAR LOCATION: Cytoplasm (Probable).
TISSUE SPECIFICITY: Detected in heart, brain, placenta, lung, peripheral blood leukocytes, spleen, kidney, testis, prostate, pancreas and lymph node.
DOMAIN: Contains an N-terminal kinase domain and a C-terminal caspase activation and recruitment domain (CARD) that mediates the recruitment of CARD-containing proteins.
PTM: Autophosphorylated. Autophosphorylation at Tyr-474 is necessary for effective NOD2 signaling. Phosphorylated upon DNA damage, probably by ATM or ATR.
PTM: Ubiquitinated on Lys-209; undergoes 'Lys-63'-linked polyubiquitination catalyzed by ITCH. Polyubiquitinated with 'Lys- 48' and 'Lys-63'-linked chains by BIRC2/c-IAP1 and BIRC3/c-IAP2, leading to activation of NF-kappa-B.
SIMILARITY: Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family.
SIMILARITY: Contains 1 CARD domain.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RIPK2
CDC HuGE Published Literature: RIPK2
Positive Disease Associations: Cognitive performance , leprosy , Monocyte Chemoattractant Protein-1
Related Studies:
  1. Cognitive performance
    Cirulli ,et al. Eur J Hum Genet 2010, Common genetic variation and performance on standardized cognitive tests , European journal of human genetics : EJHG 2010 . [PubMed 20125193]
  2. leprosy
    Zhang ,et al. 2009, Genomewide Association Study of Leprosy, The New England journal of medicine 2009 361- 27 : 2609-18. [PubMed 20018961]
  3. leprosy
    Zhang ,et al. 2009, Genomewide Association Study of Leprosy, The New England journal of medicine 2009 361- 27 : 2609-18. [PubMed 20018961]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: RIPK2
Diseases sorted by gene-association score: lymphoproliferative syndrome, x-linked, 2 (8), human granulocytic anaplasmosis (5), leprosy (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.82 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 222.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -172.50314-0.549 Picture PostScript Text
3' UTR -113.94648-0.176 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001315 - CARD
IPR011029 - DEATH-like
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017322 - Rcpt-int_Ser/Thr_kinase-2
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00619 - Caspase recruitment domain
PF07714 - Protein tyrosine kinase

SCOP Domains:
47986 - DEATH domain
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on O43353
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004715 non-membrane spanning protein tyrosine kinase activity
GO:0004871 signal transducer activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0030274 LIM domain binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0050700 CARD domain binding
GO:0089720 caspase binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000187 activation of MAPK activity
GO:0001961 positive regulation of cytokine-mediated signaling pathway
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0002827 positive regulation of T-helper 1 type immune response
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007249 I-kappaB kinase/NF-kappaB signaling
GO:0007254 JNK cascade
GO:0010800 positive regulation of peptidyl-threonine phosphorylation
GO:0010942 positive regulation of cell death
GO:0016310 phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0031398 positive regulation of protein ubiquitination
GO:0031663 lipopolysaccharide-mediated signaling pathway
GO:0032092 positive regulation of protein binding
GO:0032722 positive regulation of chemokine production
GO:0032727 positive regulation of interferon-alpha production
GO:0032728 positive regulation of interferon-beta production
GO:0032729 positive regulation of interferon-gamma production
GO:0032735 positive regulation of interleukin-12 production
GO:0032743 positive regulation of interleukin-2 production
GO:0032755 positive regulation of interleukin-6 production
GO:0032760 positive regulation of tumor necrosis factor production
GO:0032874 positive regulation of stress-activated MAPK cascade
GO:0033091 positive regulation of immature T cell proliferation
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0034134 toll-like receptor 2 signaling pathway
GO:0034142 toll-like receptor 4 signaling pathway
GO:0042098 T cell proliferation
GO:0042981 regulation of apoptotic process
GO:0043065 positive regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043330 response to exogenous dsRNA
GO:0045087 innate immune response
GO:0045627 positive regulation of T-helper 1 cell differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046330 positive regulation of JNK cascade
GO:0046641 positive regulation of alpha-beta T cell proliferation
GO:0050718 positive regulation of interleukin-1 beta secretion
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050830 defense response to Gram-positive bacterium
GO:0050852 T cell receptor signaling pathway
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0070423 nucleotide-binding oligomerization domain containing signaling pathway
GO:0070427 nucleotide-binding oligomerization domain containing 1 signaling pathway
GO:0070431 nucleotide-binding oligomerization domain containing 2 signaling pathway
GO:0070498 interleukin-1-mediated signaling pathway
GO:0070555 response to interleukin-1
GO:0070671 response to interleukin-12
GO:0070673 response to interleukin-18
GO:0071222 cellular response to lipopolysaccharide
GO:0071223 cellular response to lipoteichoic acid
GO:0071224 cellular response to peptidoglycan
GO:0071225 cellular response to muramyl dipeptide
GO:0097202 activation of cysteine-type endopeptidase activity
GO:1904417 positive regulation of xenophagy

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0031982 vesicle
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  KJ892616 - Synthetic construct Homo sapiens clone ccsbBroadEn_02010 RIPK2 gene, encodes complete protein.
KJ905360 - Synthetic construct Homo sapiens clone ccsbBroadEn_14911 RIPK2 gene, encodes complete protein.
LF383847 - JP 2014500723-A/191350: Polycomb-Associated Non-Coding RNAs.
AY358814 - Homo sapiens clone DNA43305 RIPK2 (UNQ277) mRNA, complete cds.
AK301448 - Homo sapiens cDNA FLJ50893 complete cds, highly similar to Receptor-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1).
AF027706 - Homo sapiens serine/threonine kinase RICK (RICK) mRNA, complete cds.
AF064824 - Homo sapiens CARD-containing ICE associated kinase mRNA, complete cds.
AK075213 - Homo sapiens cDNA FLJ90732 fis, clone PLACE1010081, highly similar to Receptor-interacting serine/threonine-protein kinase 2 (EC 2.7.11.1).
AY358813 - Homo sapiens clone DNA43306 RIPK2 (UNQ277) mRNA, complete cds.
BC004553 - Homo sapiens receptor-interacting serine-threonine kinase 2, mRNA (cDNA clone MGC:10684 IMAGE:4026156), complete cds.
JD527344 - Sequence 508368 from Patent EP1572962.
JD480163 - Sequence 461187 from Patent EP1572962.
AY524045 - Homo sapiens GIG30 mRNA, complete cds.
JD532532 - Sequence 513556 from Patent EP1572962.
JD395322 - Sequence 376346 from Patent EP1572962.
AB587542 - Synthetic construct DNA, clone: pF1KE0971, Homo sapiens RIPK2 gene for receptor-interacting serine-threonine kinase 2, without stop codon, in Flexi system.
CU678766 - Synthetic construct Homo sapiens gateway clone IMAGE:100020326 5' read RIPK2 mRNA.
KU178437 - Homo sapiens receptor-interacting serine-threonine kinase 2 isoform 1 (RIPK2) mRNA, partial cds.
KU178438 - Homo sapiens receptor-interacting serine-threonine kinase 2 isoform 2 (RIPK2) mRNA, complete cds, alternatively spliced.
AF078530 - Homo sapiens receptor interacting protein 2 (RIP2) mRNA, complete cds.
AY562996 - Homo sapiens receptor-interacting serine-threonine kinase 2 isoform b (RIPK2) mRNA, partial cds, alternatively spliced.
LF353919 - JP 2014500723-A/161422: Polycomb-Associated Non-Coding RNAs.
JD038418 - Sequence 19442 from Patent EP1572962.
MA619424 - JP 2018138019-A/191350: Polycomb-Associated Non-Coding RNAs.
MA589496 - JP 2018138019-A/161422: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04621 - NOD-like receptor signaling pathway
hsa04722 - Neurotrophin signaling pathway
hsa05131 - Shigellosis

BioCarta from NCI Cancer Genome Anatomy Project
h_fasPathway - FAS signaling pathway ( CD95 )

Reactome (by CSHL, EBI, and GO)

Protein O43353 (Reactome details) participates in the following event(s):

R-HSA-168405 Activated NOD oligomer recruites RIP2 (RICK)
R-HSA-193656 p75NTR interacts with RIP2
R-HSA-622415 RIP2 binds NEMO
R-HSA-741395 CARD9 binds RIP2 (and NOD2)
R-HSA-202459 Phosphorylation of Bcl10
R-HSA-688137 RIP2 is K63 polyubiquitinated
R-HSA-741386 RIP2 induces K63-linked ubiquitination of NEMO
R-HSA-688136 TNFAIP3 (A20) deubiquitinates RIP2
R-HSA-741411 CYLD deubiquitinates NEMO
R-HSA-688985 K63 polyubiquitinated RIP2 associates with the TAK1 complex
R-HSA-168184 Activated TAK1 mediates phosphorylation of the IKK Complex
R-HSA-450337 Activated TAK1 phosphorylates MKK4/MKK7
R-HSA-450346 activated human TAK1 phosphorylates MKK3/MKK6
R-HSA-168638 NOD1/2 Signaling Pathway
R-HSA-209543 p75NTR recruits signalling complexes
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-193639 p75NTR signals via NF-kB
R-HSA-202424 Downstream TCR signaling
R-HSA-5689896 Ovarian tumor domain proteases
R-HSA-168249 Innate Immune System
R-HSA-193704 p75 NTR receptor-mediated signalling
R-HSA-202403 TCR signaling
R-HSA-5688426 Deubiquitination
R-HSA-168256 Immune System
R-HSA-73887 Death Receptor Signalling
R-HSA-1280218 Adaptive Immune System
R-HSA-597592 Post-translational protein modification
R-HSA-162582 Signal Transduction
R-HSA-392499 Metabolism of proteins
R-HSA-445989 TAK1 activates NFkB by phosphorylation and activation of IKKs complex
R-HSA-9020702 Interleukin-1 signaling
R-HSA-450321 JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
R-HSA-450302 activated TAK1 mediates p38 MAPK activation
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-446652 Interleukin-1 family signaling
R-HSA-450294 MAP kinase activation
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-449147 Signaling by Interleukins
R-HSA-448424 Interleukin-17 signaling
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-1280215 Cytokine Signaling in Immune system

-  Other Names for This Gene
  Alternate Gene Symbols: CARDIAK, NM_003821, NP_003812, O43353, Q6UWF0, RICK, RIP2, RIPK2_HUMAN, UNQ277/PRO314/PRO34092
UCSC ID: uc003yee.3
RefSeq Accession: NM_003821
Protein: O43353 (aka RIPK2_HUMAN or RIK2_HUMAN)
CCDS: CCDS6247.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_003821.5
exon count: 11CDS single in 3' UTR: no RNA size: 2588
ORF size: 1623CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3425.00frame shift in genome: no % Coverage: 99.88
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.