Human Gene IL10RA (uc001prv.3)
  Description: Homo sapiens interleukin 10 receptor, alpha (IL10RA), transcript variant 1, mRNA.
RefSeq Summary (NM_001558): The protein encoded by this gene is a receptor for interleukin 10. This protein is structurally related to interferon receptors. It has been shown to mediate the immunosuppressive signal of interleukin 10, and thus inhibits the synthesis of proinflammatory cytokines. This receptor is reported to promote survival of progenitor myeloid cells through the insulin receptor substrate-2/PI 3-kinase/AKT pathway. Activation of this receptor leads to tyrosine phosphorylation of JAK1 and TYK2 kinases. Two transcript variants, one protein-coding and the other not protein-coding, have been found for this gene. [provided by RefSeq, Jan 2009].
Transcript (Including UTRs)
   Position: hg19 chr11:117,857,106-117,872,199 Size: 15,094 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr11:117,857,183-117,870,356 Size: 13,174 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:117,857,106-117,872,199)mRNA (may differ from genome)Protein (578 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: I10R1_HUMAN
DESCRIPTION: RecName: Full=Interleukin-10 receptor subunit alpha; Short=IL-10 receptor subunit alpha; Short=IL-10R subunit alpha; Short=IL-10RA; AltName: Full=CDw210a; AltName: Full=Interleukin-10 receptor subunit 1; Short=IL-10R subunit 1; Short=IL-10R1; AltName: CD_antigen=CD210; Flags: Precursor;
FUNCTION: Receptor for IL10; binds IL10 with a high affinity.
INTERACTION: P03180:BCRF1 (xeno); NbExp=2; IntAct=EBI-1031656, EBI-1042167;
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Spleen, thymus, and PBMC. Weak expression in pancreas, skeletal muscle, brain, heart, and kidney. Placenta, lung, and liver showed intermediate levels. Monocytes, B-cells, large granular lymphocytes, and T-cells express high levels.
DISEASE: Defects in IL10RA are the cause of inflammatory bowel disease type 28 (IBD28) [MIM:613148]. It is a chronic, relapsing inflammation of the gastrointestinal tract with a complex etiology. It is subdivided into Crohn disease and ulcerative colitis phenotypes. Crohn disease may affect any part of the gastrointestinal tract from the mouth to the anus, but most frequently it involves the terminal ileum and colon. Bowel inflammation is transmural and discontinuous; it may contain granulomas or be associated with intestinal or perianal fistulas. In contrast, in ulcerative colitis, the inflammation is continuous and limited to rectal and colonic mucosal layers; fistulas and granulomas are not observed. Both diseases include extraintestinal inflammation of the skin, eyes, or joints.
SIMILARITY: Belongs to the type II cytokine receptor family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il10ra/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): IL10RA
CDC HuGE Published Literature: IL10RA
Positive Disease Associations: Body Height , cirrhosis , HIV , Inflammation|Premature Birth , schizophrenia , Tunica Media , vascular disease
Related Studies:
  1. Body Height
    , , . [PubMed 0]
  2. cirrhosis
    Hofer, H. et al. 2005, Bi-allelic presence of the interleukin-10 receptor 1 G330R allele is associated with cirrhosis in chronic HCV-1 infection., Genes and immunity. 2005 May;6(3):242-7. [PubMed 15729365]
    Our work implies that IL-10R1 SNP4 is a recessively inherited risk factor for hepatic cirrhosis in HCV genotype-1 infection.
  3. HIV
    Do, H. et al. 2006, Associations of the IL2Ralpha, IL4Ralpha, IL10Ralpha, and IFN (gamma) R1 cytokine receptor genes with AIDS progression in a French AIDS cohort, Immunogenetics 2006. [PubMed 16491350]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: IL10RA
Diseases sorted by gene-association score: inflammatory bowel disease 28, early onset, autosomal recessive* (1300), inflammatory bowel disease 25, early onset, autosomal recessive* (202), cytomegalovirus retinitis (23), inflammatory bowel disease (19), crohn's disease (12), colitis (9), giant cell myocarditis (9), ulcerative colitis (8), post-transplant lymphoproliferative disease (5), extrapulmonary tuberculosis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.69 RPKM in Spleen
Total median expression: 328.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.1077-0.430 Picture PostScript Text
3' UTR -730.801843-0.397 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold

Pfam Domains:
PF01108 - Tissue factor

SCOP Domains:
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1J7V - X-ray MuPIT 1LQS - X-ray MuPIT 1Y6K - X-ray MuPIT 1Y6M - X-ray 1Y6N - X-ray


ModBase Predicted Comparative 3D Structure on Q13651
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004920 interleukin-10 receptor activity
GO:0005515 protein binding
GO:0019969 interleukin-10 binding
GO:0038023 signaling receptor activity

Biological Process:
GO:0019221 cytokine-mediated signaling pathway
GO:0032496 response to lipopolysaccharide
GO:0050807 regulation of synapse organization

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK301484 - Homo sapiens cDNA FLJ51121 complete cds, highly similar to Interleukin-10 receptor alpha chain precursor.
AK291645 - Homo sapiens cDNA FLJ76876 complete cds, highly similar to Homo sapiens interleukin 10 receptor, alpha (IL10RA), mRNA.
AK301260 - Homo sapiens cDNA FLJ51116 complete cds, highly similar to Interleukin-10 receptor alpha chain precursor.
AK316342 - Homo sapiens cDNA, FLJ79241 complete cds, highly similar to Interleukin-10 receptor alpha chain precursor.
AK313049 - Homo sapiens cDNA, FLJ93524.
AK301492 - Homo sapiens cDNA FLJ51122 complete cds, highly similar to Interleukin-10 receptor alpha chain precursor.
U00672 - Human interleukin-10 receptor mRNA, complete cds.
BC028082 - Homo sapiens interleukin 10 receptor, alpha, mRNA (cDNA clone MGC:40017 IMAGE:5216986), complete cds.
CU688390 - Synthetic construct Homo sapiens gateway clone IMAGE:100023228 5' read IL10RA mRNA.
DQ891031 - Synthetic construct clone IMAGE:100003661; FLH168681.01X; RZPDo839C0194D interleukin 10 receptor, alpha (IL10RA) gene, encodes complete protein.
DQ893720 - Synthetic construct Homo sapiens clone IMAGE:100008180; FLH168677.01L; RZPDo839C0193D interleukin 10 receptor, alpha (IL10RA) gene, encodes complete protein.
AB590303 - Synthetic construct DNA, clone: pFN21AE1372, Homo sapiens IL10RA gene for interleukin 10 receptor, alpha, without stop codon, in Flexi system.
KJ897049 - Synthetic construct Homo sapiens clone ccsbBroadEn_06443 IL10RA gene, encodes complete protein.
KR710820 - Synthetic construct Homo sapiens clone CCSBHm_00017414 IL10RA (IL10RA) mRNA, encodes complete protein.
KR710821 - Synthetic construct Homo sapiens clone CCSBHm_00017415 IL10RA (IL10RA) mRNA, encodes complete protein.
JN591377 - Homo sapiens interleukin 10 alpha receptor (IL10RA) mRNA, complete cds.
AK316146 - Homo sapiens cDNA, FLJ79045 complete cds, highly similar to Interleukin-10 receptor alpha chain precursor.
AB209626 - Homo sapiens mRNA for interleukin 10 receptor, alpha precursor variant protein.
JD359273 - Sequence 340297 from Patent EP1572962.
JD563476 - Sequence 544500 from Patent EP1572962.
JD456111 - Sequence 437135 from Patent EP1572962.
JD241748 - Sequence 222772 from Patent EP1572962.
JD179228 - Sequence 160252 from Patent EP1572962.
JD190709 - Sequence 171733 from Patent EP1572962.
JD118920 - Sequence 99944 from Patent EP1572962.
JD373808 - Sequence 354832 from Patent EP1572962.
JD223609 - Sequence 204633 from Patent EP1572962.
JD059239 - Sequence 40263 from Patent EP1572962.
JD550044 - Sequence 531068 from Patent EP1572962.
JD186192 - Sequence 167216 from Patent EP1572962.
JD146037 - Sequence 127061 from Patent EP1572962.
JD283244 - Sequence 264268 from Patent EP1572962.
JD496053 - Sequence 477077 from Patent EP1572962.
JD073928 - Sequence 54952 from Patent EP1572962.
JD045558 - Sequence 26582 from Patent EP1572962.
JD171939 - Sequence 152963 from Patent EP1572962.
JD132000 - Sequence 113024 from Patent EP1572962.
JD527113 - Sequence 508137 from Patent EP1572962.
JD372540 - Sequence 353564 from Patent EP1572962.
JD439857 - Sequence 420881 from Patent EP1572962.
JD393132 - Sequence 374156 from Patent EP1572962.
JD274212 - Sequence 255236 from Patent EP1572962.
JD274794 - Sequence 255818 from Patent EP1572962.
JD054187 - Sequence 35211 from Patent EP1572962.
JD132821 - Sequence 113845 from Patent EP1572962.
JD189672 - Sequence 170696 from Patent EP1572962.
JD086387 - Sequence 67411 from Patent EP1572962.
JD413960 - Sequence 394984 from Patent EP1572962.
JD327661 - Sequence 308685 from Patent EP1572962.
JD110000 - Sequence 91024 from Patent EP1572962.
JD559444 - Sequence 540468 from Patent EP1572962.
JD314267 - Sequence 295291 from Patent EP1572962.
JD106580 - Sequence 87604 from Patent EP1572962.
JD382578 - Sequence 363602 from Patent EP1572962.
JD178595 - Sequence 159619 from Patent EP1572962.
JD165911 - Sequence 146935 from Patent EP1572962.
JD476538 - Sequence 457562 from Patent EP1572962.
JD476539 - Sequence 457563 from Patent EP1572962.
JD459790 - Sequence 440814 from Patent EP1572962.
JD173841 - Sequence 154865 from Patent EP1572962.
JD380497 - Sequence 361521 from Patent EP1572962.
JD318691 - Sequence 299715 from Patent EP1572962.
JD084472 - Sequence 65496 from Patent EP1572962.
JD077512 - Sequence 58536 from Patent EP1572962.
JD560042 - Sequence 541066 from Patent EP1572962.
JD375150 - Sequence 356174 from Patent EP1572962.
JD077079 - Sequence 58103 from Patent EP1572962.
JD538452 - Sequence 519476 from Patent EP1572962.
JD196441 - Sequence 177465 from Patent EP1572962.
JD144042 - Sequence 125066 from Patent EP1572962.
JD085548 - Sequence 66572 from Patent EP1572962.
JD516916 - Sequence 497940 from Patent EP1572962.
JD524634 - Sequence 505658 from Patent EP1572962.
JD205625 - Sequence 186649 from Patent EP1572962.
JD182357 - Sequence 163381 from Patent EP1572962.
JD526772 - Sequence 507796 from Patent EP1572962.
JD054589 - Sequence 35613 from Patent EP1572962.
JD527221 - Sequence 508245 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04060 - Cytokine-cytokine receptor interaction
hsa04630 - Jak-STAT signaling pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_il10Pathway - IL-10 Anti-inflammatory Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q13651 (Reactome details) participates in the following event(s):

R-HSA-449803 IL10 dimer binds IL10RA:JAK1
R-HSA-449811 IL10 dimer:2xIL10RA1:JAK1 binds IL10RB:TYK2
R-HSA-6784323 IL10 dimer:2xp-Y-IL10RA:p-Y-JAK1:2xIL10RB:p-Y-TYK2 binds STAT3
R-HSA-6784791 p-Y705-STAT3 dissociates from IL10 dimer:2xp-Y-IL10RA:p-Y-JAK1:2xIL10RB:p-Y-TYK2:p-Y705-STAT3
R-HSA-6784006 STAT3 is phosphorylated by p-Y-JAK1,P-Y-TYK2
R-HSA-6783783 Interleukin-10 signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K6I0, B0YJ27, I10R1_HUMAN, IL10R, NM_001558, NP_001549, Q13651
UCSC ID: uc001prv.3
RefSeq Accession: NM_001558
Protein: Q13651 (aka I10R1_HUMAN or I10R_HUMAN)
CCDS: CCDS8388.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001558.3
exon count: 7CDS single in 3' UTR: no RNA size: 3672
ORF size: 1737CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3587.00frame shift in genome: no % Coverage: 99.59
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.