Human Gene GPSM1 (uc004chd.2)
  Description: Homo sapiens G-protein signaling modulator 1 (GPSM1), transcript variant 1, mRNA.
RefSeq Summary (NM_001145638): G-protein signaling modulators (GPSMs) play diverse functional roles through their interaction with G-protein subunits. This gene encodes a receptor-independent activator of G protein signaling, which is one of several factors that influence the basal activity of G-protein signaling systems. The protein contains seven tetratricopeptide repeats in its N-terminal half and four G-protein regulatory (GPR) motifs in its C-terminal half. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011].
Transcript (Including UTRs)
   Position: hg19 chr9:139,221,932-139,254,057 Size: 32,126 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr9:139,222,152-139,252,672 Size: 30,521 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:139,221,932-139,254,057)mRNA (may differ from genome)Protein (675 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GPSM1_HUMAN
DESCRIPTION: RecName: Full=G-protein-signaling modulator 1; AltName: Full=Activator of G-protein signaling 3;
FUNCTION: Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G- protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction.
SUBUNIT: Interacts with GNAI1, GNAI2 and GNAI3 preferentially in their GDP-bound state. May also interact with GNAO1. Interacts with STK11/LKB1 and MACF1 (By similarity). Interacts with INSC/inscuteable and FRMPD1.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Endoplasmic reticulum membrane; Peripheral membrane protein; Cytoplasmic side. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Cell membrane; Peripheral membrane protein; Cytoplasmic side.
TISSUE SPECIFICITY: Expressed in intestinal cells.
DOMAIN: The GoLoco domains mediate interaction with G(i/o) alpha (By similarity). The GoLoco domains are essential for the GDI activity toward G(i/o) alpha.
PTM: Phosphorylation regulates interaction with G(i/o) alpha (By similarity).
SIMILARITY: Belongs to the GPSM family.
SIMILARITY: Contains 4 GoLoco domains.
SIMILARITY: Contains 9 TPR repeats.
SEQUENCE CAUTION: Sequence=AAH09979.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=AAH17353.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAB55951.1; Type=Frameshift; Positions=657; Sequence=CAI19339.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: GPSM1
Diseases sorted by gene-association score: drug addiction (12), spherocytosis, type 5 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.53 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 267.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.60220-0.512 Picture PostScript Text
3' UTR -638.981385-0.461 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024804 - G_prot_signal_mod_1
IPR003109 - GoLoco_motif
IPR001440 - TPR-1
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR019734 - TPR_repeat

Pfam Domains:
PF02188 - GoLoco motif
PF13176 - Tetratricopeptide repeat
PF13181 - Tetratricopeptide repeat
PF13374 - Tetratricopeptide repeat
PF13424 - Tetratricopeptide repeat

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like

ModBase Predicted Comparative 3D Structure on Q86YR5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
 Protein SequenceProtein Sequence Protein Sequence 
 AlignmentAlignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005092 GDP-dissociation inhibitor activity
GO:0005515 protein binding
GO:0030695 GTPase regulator activity

Biological Process:
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0016239 positive regulation of macroautophagy
GO:0030154 cell differentiation
GO:0034260 negative regulation of GTPase activity
GO:1905098 negative regulation of guanyl-nucleotide exchange factor activity

Cellular Component:
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0032991 macromolecular complex
GO:0005938 cell cortex


-  Descriptions from all associated GenBank mRNAs
  BC009979 - Homo sapiens G-protein signaling modulator 1 (AGS3-like, C. elegans), mRNA (cDNA clone MGC:16636 IMAGE:4121647), complete cds.
BC017353 - Homo sapiens G-protein signaling modulator 1 (AGS3-like, C. elegans), mRNA (cDNA clone MGC:29669 IMAGE:5021010), complete cds.
JD407384 - Sequence 388408 from Patent EP1572962.
JD211096 - Sequence 192120 from Patent EP1572962.
JD317315 - Sequence 298339 from Patent EP1572962.
JD453235 - Sequence 434259 from Patent EP1572962.
JD125358 - Sequence 106382 from Patent EP1572962.
CU675958 - Synthetic construct Homo sapiens gateway clone IMAGE:100017657 5' read GPSM1 mRNA.
KJ902413 - Synthetic construct Homo sapiens clone ccsbBroadEn_11807 GPSM1 gene, encodes complete protein.
AY173053 - Homo sapiens activator of G-protein signaling 3 (AGS3) mRNA, complete cds.
AL117478 - Homo sapiens mRNA; cDNA DKFZp727I051 (from clone DKFZp727I051); partial cds.
JD019571 - Sequence 595 from Patent EP1572962.
JD032456 - Sequence 13480 from Patent EP1572962.
BC009943 - Homo sapiens G-protein signalling modulator 1 (AGS3-like, C. elegans), mRNA (cDNA clone IMAGE:4100024), partial cds.
BC017257 - Homo sapiens G-protein signalling modulator 1 (AGS3-like, C. elegans), mRNA (cDNA clone IMAGE:3503494), partial cds.
JD021698 - Sequence 2722 from Patent EP1572962.
JD030497 - Sequence 11521 from Patent EP1572962.
BC048343 - Homo sapiens G-protein signaling modulator 1 (AGS3-like, C. elegans), mRNA (cDNA clone IMAGE:5242824), complete cds.
JD408911 - Sequence 389935 from Patent EP1572962.
JD138839 - Sequence 119863 from Patent EP1572962.
JD363346 - Sequence 344370 from Patent EP1572962.
JD057726 - Sequence 38750 from Patent EP1572962.
JD210591 - Sequence 191615 from Patent EP1572962.
JD157754 - Sequence 138778 from Patent EP1572962.
JD396269 - Sequence 377293 from Patent EP1572962.
JD271231 - Sequence 252255 from Patent EP1572962.
JD398992 - Sequence 380016 from Patent EP1572962.
JD329338 - Sequence 310362 from Patent EP1572962.
JD071465 - Sequence 52489 from Patent EP1572962.
JD109510 - Sequence 90534 from Patent EP1572962.
JD536836 - Sequence 517860 from Patent EP1572962.
JD123446 - Sequence 104470 from Patent EP1572962.
JD540387 - Sequence 521411 from Patent EP1572962.
JD164968 - Sequence 145992 from Patent EP1572962.
JD458206 - Sequence 439230 from Patent EP1572962.
JD438356 - Sequence 419380 from Patent EP1572962.
JD553603 - Sequence 534627 from Patent EP1572962.
JD166764 - Sequence 147788 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A9Z1X4, AGS3, B1B0W3, GPSM1_HUMAN, NM_001145638, NP_001139110, Q86SR5, Q86YR5, Q969T1, Q9UFS8
UCSC ID: uc004chd.2
RefSeq Accession: NM_001145638
Protein: Q86YR5 (aka GPSM1_HUMAN)
CCDS: CCDS48055.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001145638.1
exon count: 14CDS single in 3' UTR: no RNA size: 3651
ORF size: 2028CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 4256.00frame shift in genome: no % Coverage: 99.51
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.