Human Gene GLUL (uc001gpa.2)
  Description: Homo sapiens glutamate-ammonia ligase (GLUL), transcript variant 3, mRNA.
RefSeq Summary (NM_001033056): The protein encoded by this gene belongs to the glutamine synthetase family. It catalyzes the synthesis of glutamine from glutamate and ammonia in an ATP-dependent reaction. This protein plays a role in ammonia and glutamate detoxification, acid-base homeostasis, cell signaling, and cell proliferation. Glutamine is an abundant amino acid, and is important to the biosynthesis of several amino acids, pyrimidines, and purines. Mutations in this gene are associated with congenital glutamine deficiency, and overexpression of this gene was observed in some primary liver cancer samples. There are six pseudogenes of this gene found on chromosomes 2, 5, 9, 11, and 12. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014].
Transcript (Including UTRs)
   Position: hg19 chr1:182,350,839-182,360,539 Size: 9,701 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr1:182,353,540-182,357,872 Size: 4,333 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:182,350,839-182,360,539)mRNA (may differ from genome)Protein (373 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GLNA_HUMAN
DESCRIPTION: RecName: Full=Glutamine synthetase; Short=GS; EC=6.3.1.2; AltName: Full=Glutamate decarboxylase; EC=4.1.1.15; AltName: Full=Glutamate--ammonia ligase;
FUNCTION: This enzyme has 2 functions: it catalyzes the production of glutamine and 4-aminobutanoate (gamma-aminobutyric acid, GABA), the latter in a pyridoxal phosphate-independent manner (By similarity). Essential for proliferation of fetal skin fibroblasts.
CATALYTIC ACTIVITY: ATP + L-glutamate + NH(3) = ADP + phosphate + L-glutamine.
CATALYTIC ACTIVITY: L-glutamate = 4-aminobutanoate + CO(2).
COFACTOR: Biotin (By similarity).
COFACTOR: Magnesium or manganese (By similarity).
SUBUNIT: Homooctamer and homotetramer. Interacts with PALMD (By similarity).
INTERACTION: Self; NbExp=3; IntAct=EBI-746653, EBI-746653;
SUBCELLULAR LOCATION: Cytoplasm. Mitochondrion (By similarity).
DEVELOPMENTAL STAGE: Expressed during early fetal stages.
INDUCTION: By glucocorticoids. Vitamin D and the Wnt signaling pathway inhibit its expression and activity.
PTM: Ubiquitinated by ZNRF1 (By similarity).
DISEASE: Defects in GLUL are the cause of congenital systemic glutamine deficiency (CSGD) [MIM:610015]. CSGD is a rare developmental disorder with severe brain malformation resulting in multi-organ failure and neonatal death. Glutamine is largely absent from affected patients serum, urine and cerebrospinal fluid.
SIMILARITY: Belongs to the glutamine synthetase family.
WEB RESOURCE: Name=Wikipedia; Note=Glutamine synthetase entry; URL="http://en.wikipedia.org/wiki/Glutamine_synthetase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): GLUL
CDC HuGE Published Literature: GLUL

-  MalaCards Disease Associations
  MalaCards Gene Search: GLUL
Diseases sorted by gene-association score: glutamine deficiency, congenital* (1650), hepatocellular adenoma (25), hepatic encephalopathy (13), hyperinsulinism-hyperammonemia syndrome (10), glutathione synthetase deficiency (10), brain edema (9), wernicke encephalopathy (9), retinal detachment (7), griscelli syndrome, type 1 (6), fructose intolerance, hereditary (5), serine deficiency (4), temporal lobe epilepsy (4), hepatocellular carcinoma (3), amyotrophic lateral sclerosis 1 (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 442.13 RPKM in Nerve - Tibial
Total median expression: 6966.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -114.60243-0.472 Picture PostScript Text
3' UTR -814.172701-0.301 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008147 - Gln_synt_beta
IPR014746 - Gln_synth/guanido_kin_cat_dom
IPR008146 - Gln_synth_cat_dom

Pfam Domains:
PF00120 - Glutamine synthetase, catalytic domain
PF03951 - Glutamine synthetase, beta-Grasp domain

SCOP Domains:
55931 - Glutamine synthetase/guanido kinase
54368 - Glutamine synthetase, N-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2OJW - X-ray MuPIT 2QC8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P15104
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0004351 glutamate decarboxylase activity
GO:0004356 glutamate-ammonia ligase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016595 glutamate binding
GO:0016829 lyase activity
GO:0016874 ligase activity
GO:0030145 manganese ion binding
GO:0042802 identical protein binding
GO:0045503 dynein light chain binding

Biological Process:
GO:0001504 neurotransmitter uptake
GO:0006536 glutamate metabolic process
GO:0006538 glutamate catabolic process
GO:0006542 glutamine biosynthetic process
GO:0006807 nitrogen compound metabolic process
GO:0008283 cell proliferation
GO:0008652 cellular amino acid biosynthetic process
GO:0009267 cellular response to starvation
GO:0009749 response to glucose
GO:0019676 ammonia assimilation cycle
GO:0032024 positive regulation of insulin secretion
GO:0050679 positive regulation of epithelial cell proliferation
GO:0051260 protein homooligomerization
GO:0051968 positive regulation of synaptic transmission, glutamatergic

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005791 rough endoplasmic reticulum
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043204 perikaryon
GO:0043209 myelin sheath
GO:0043231 intracellular membrane-bounded organelle
GO:0043679 axon terminus
GO:0044297 cell body
GO:0070062 extracellular exosome
GO:0097386 glial cell projection


-  Descriptions from all associated GenBank mRNAs
  AL161952 - Homo sapiens mRNA; cDNA DKFZp434M0813 (from clone DKFZp434M0813); partial cds.
AY947343 - Homo sapiens cell proliferation-inducing protein 59 (PIG59) mRNA, complete cds.
BC011700 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:19700 IMAGE:3528830), complete cds.
BC051726 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:48617 IMAGE:5261804), complete cds.
BX537384 - Homo sapiens mRNA; cDNA DKFZp686E0382 (from clone DKFZp686E0382); complete cds.
S70290 - glutamine synthetase [human, tumorous liver, mRNA Partial, 2631 nt].
BC018992 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:20095 IMAGE:3352740), complete cds.
X59834 - Human rearranged mRNA for glutamine synthase.
BC011852 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:20322 IMAGE:4137547), complete cds.
JD234653 - Sequence 215677 from Patent EP1572962.
JD320538 - Sequence 301562 from Patent EP1572962.
JD403688 - Sequence 384712 from Patent EP1572962.
JD432152 - Sequence 413176 from Patent EP1572962.
JD411658 - Sequence 392682 from Patent EP1572962.
JD161874 - Sequence 142898 from Patent EP1572962.
JD041837 - Sequence 22861 from Patent EP1572962.
JD312400 - Sequence 293424 from Patent EP1572962.
JD301749 - Sequence 282773 from Patent EP1572962.
JD172183 - Sequence 153207 from Patent EP1572962.
JD469637 - Sequence 450661 from Patent EP1572962.
AK301600 - Homo sapiens cDNA FLJ57219 complete cds, highly similar to Glutamine synthetase (EC 6.3.1.2).
JD433221 - Sequence 414245 from Patent EP1572962.
JD300214 - Sequence 281238 from Patent EP1572962.
JD114061 - Sequence 95085 from Patent EP1572962.
JD034509 - Sequence 15533 from Patent EP1572962.
JD020652 - Sequence 1676 from Patent EP1572962.
BC031964 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:42945 IMAGE:4837475), complete cds.
BC010037 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone MGC:19730 IMAGE:3545927), complete cds.
Y00387 - Human mRNA for glutamine synthetase (EC 6.3.1.2).
AK122784 - Homo sapiens cDNA FLJ16338 fis, clone TESTI2004920, highly similar to GLUTAMINE SYNTHETASE (EC 6.3.1.2).
JD380369 - Sequence 361393 from Patent EP1572962.
JD249093 - Sequence 230117 from Patent EP1572962.
AY513283 - Homo sapiens proliferation-inducing protein 43 (PIG43) mRNA, complete cds.
JD501230 - Sequence 482254 from Patent EP1572962.
JD163402 - Sequence 144426 from Patent EP1572962.
AY486122 - Homo sapiens glutamine synthetase mRNA, complete cds.
KJ896892 - Synthetic construct Homo sapiens clone ccsbBroadEn_06286 GLUL gene, encodes complete protein.
KR710400 - Synthetic construct Homo sapiens clone CCSBHm_00012151 GLUL (GLUL) mRNA, encodes complete protein.
KR710401 - Synthetic construct Homo sapiens clone CCSBHm_00012152 GLUL (GLUL) mRNA, encodes complete protein.
DQ893278 - Synthetic construct clone IMAGE:100005908; FLH195882.01X; RZPDo839H04152D glutamate-ammonia ligase (glutamine synthetase) (GLUL) gene, encodes complete protein.
KJ905759 - Synthetic construct Homo sapiens clone ccsbBroadEn_15429 GLUL gene, encodes complete protein.
DQ896609 - Synthetic construct Homo sapiens clone IMAGE:100011069; FLH195878.01L; RZPDo839H04151D glutamate-ammonia ligase (glutamine synthetase) (GLUL) gene, encodes complete protein.
EU832658 - Synthetic construct Homo sapiens clone HAIB:100067687; DKFZo008F1031 glutamate-ammonia ligase (glutamine synthetase) protein (GLUL) gene, encodes complete protein.
EU832735 - Synthetic construct Homo sapiens clone HAIB:100067764; DKFZo004F1032 glutamate-ammonia ligase (glutamine synthetase) protein (GLUL) gene, encodes complete protein.
AB528372 - Synthetic construct DNA, clone: pF1KB3507, Homo sapiens GLUL gene for glutamate-ammonia ligase, without stop codon, in Flexi system.
BC127883 - Homo sapiens glutamate-ammonia ligase (glutamine synthetase), mRNA (cDNA clone IMAGE:40131529), partial cds.
AK092874 - Homo sapiens cDNA FLJ35555 fis, clone SPLEN2004773, highly similar to GLUTAMINE SYNTHETASE (EC 6.3.1.2).

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00250 - Alanine, aspartate and glutamate metabolism
hsa00330 - Arginine and proline metabolism
hsa00910 - Nitrogen metabolism
hsa01100 - Metabolic pathways

BioCyc Knowledge Library
GLUTAMINE-SYN2-PWY - glutamine biosynthesis II

Reactome (by CSHL, EBI, and GO)

Protein P15104 (Reactome details) participates in the following event(s):

R-HSA-70606 glutamate + NH4+ + ATP => glutamine + ADP + orthophosphate [GLUL]
R-HSA-70614 Amino acid synthesis and interconversion (transamination)
R-HSA-210455 Astrocytic Glutamate-Glutamine Uptake And Metabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-112313 Neurotransmitter uptake and metabolism In glial cells
R-HSA-1430728 Metabolism
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: GLNA_HUMAN, GLNS, NM_001033056, NP_002056, P15104, Q499Y9, Q5T9Z1, Q7Z3W4, Q8IZ17
UCSC ID: uc001gpa.2
RefSeq Accession: NM_001033056
Protein: P15104 (aka GLNA_HUMAN)
CCDS: CCDS1344.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001033056.2
exon count: 7CDS single in 3' UTR: no RNA size: 4083
ORF size: 1122CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2285.00frame shift in genome: no % Coverage: 99.58
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.