Human Gene FOXM1 (uc001qlf.3)
  Description: Homo sapiens forkhead box M1 (FOXM1), transcript variant 2, mRNA.
RefSeq Summary (NM_021953): The protein encoded by this gene is a transcriptional activator involved in cell proliferation. The encoded protein is phosphorylated in M phase and regulates the expression of several cell cycle genes, such as cyclin B1 and cyclin D1. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2011].
Transcript (Including UTRs)
   Position: hg19 chr12:2,966,847-2,986,321 Size: 19,475 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr12:2,967,804-2,983,644 Size: 15,841 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:2,966,847-2,986,321)mRNA (may differ from genome)Protein (763 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FOXM1_HUMAN
DESCRIPTION: RecName: Full=Forkhead box protein M1; AltName: Full=Forkhead-related protein FKHL16; AltName: Full=Hepatocyte nuclear factor 3 forkhead homolog 11; Short=HFH-11; Short=HNF-3/fork-head homolog 11; AltName: Full=M-phase phosphoprotein 2; AltName: Full=MPM-2 reactive phosphoprotein 2; AltName: Full=Transcription factor Trident; AltName: Full=Winged-helix factor from INS-1 cells;
FUNCTION: Transcriptional factor regulating the expression of cell cycle genes essential for DNA replication and mitosis. Plays a role in the control of cell proliferation. Plays also a role in DNA breaks repair participating in the DNA damage checkpoint response.
INTERACTION: Q00534:CDK6; NbExp=2; IntAct=EBI-866499, EBI-295663; P35222:CTNNB1; NbExp=16; IntAct=EBI-866480, EBI-491549; P03129:E7 (xeno); NbExp=3; IntAct=EBI-866499, EBI-866453; O43524:FOXO3; NbExp=2; IntAct=EBI-866480, EBI-1644164;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Expressed in thymus, testis, small intestine, colon followed by ovary. Appears to be expressed only in adult organs containing proliferating/cycling cells or in response to growth factors. Also expressed in epithelial cell lines derived from tumors. Not expressed in resting cells. Isoform 2 is highly expressed in testis.
DEVELOPMENTAL STAGE: Embryonic expression pattern: liver, lung, intestine, kidney, urinary tract; adult expression pattern: intestine, colon, testis and thymus.
INDUCTION: Induced during liver regeneration and oxidative stress.
DOMAIN: Within the protein there is a domain which acts as a transcriptional activator. Insertion of a splicing sequence within it inactivates this transcriptional activity, as it is the case for isoform 4.
PTM: Phosphorylated in M (mitotic) phase. Phosphorylation by the checkpoint kinase CHEK2 in response to DNA damage increases the FOXM1 protein stability probably stimulating the transcription of genes involved in DNA repair. Phosphorylated by CDK1 in late S and G2 phases, creating docking sites for the POLO box domains of PLK1. Subsequently, PLK1 binds and phosphorylates FOXM1, leading to activation of transcriptional activity and subsequent enhanced expression of key mitotic regulators.
SIMILARITY: Contains 1 fork-head DNA-binding domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/FOXM1ID40631ch12p13.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/foxm1/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FOXM1
CDC HuGE Published Literature: FOXM1

-  MalaCards Disease Associations
  MalaCards Gene Search: FOXM1
Diseases sorted by gene-association score: meckel's diverticulum (13), balanoposthitis (7), cardiomyopathy, hypertrophic, 2 (5), cervix carcinoma (5), maturity-onset diabetes of the young (3), hepatocellular carcinoma (2), lung cancer susceptibility 3 (1), diabetes mellitus, insulin-dependent (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D001564 Benzo(a)pyrene
  • D002945 Cisplatin
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C016403 2,4-dinitrotoluene
  • C027576 4-hydroxy-2-nonenal
  • C549753 5,7,3'-trihydroxy-3,4'-dimethoxyflavone
  • C464660 6-ethylchenodeoxycholic acid
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.81 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 53.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -130.30283-0.460 Picture PostScript Text
3' UTR -330.40957-0.345 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001766 - TF_fork_head
IPR018122 - TF_fork_head_CS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00250 - Forkhead domain

SCOP Domains:
46785 - "Winged helix" DNA-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3G73 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q08050
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0019901 protein kinase binding
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001558 regulation of cell growth
GO:0006281 DNA repair
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006974 cellular response to DNA damage stimulus
GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 cell cycle
GO:0008284 positive regulation of cell proliferation
GO:0009653 anatomical structure morphogenesis
GO:0030154 cell differentiation
GO:0032873 negative regulation of stress-activated MAPK cascade
GO:0042127 regulation of cell proliferation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046578 regulation of Ras protein signal transduction
GO:0051726 regulation of cell cycle
GO:0071156 regulation of cell cycle arrest
GO:0090344 negative regulation of cell aging
GO:2000377 regulation of reactive oxygen species metabolic process
GO:2000781 positive regulation of double-strand break repair

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  BC035437 - Homo sapiens forkhead box M1, mRNA (cDNA clone IMAGE:4155178).
L16783 - Human putative M phase phosphoprotein 2 (MPP2) mRNA, complete cds.
U74613 - Homo sapiens forkhead box M1B (FOXM1B) mRNA, complete cds.
U74612 - Homo sapiens forkhead box M1A (FOXM1A) mRNA, complete cds.
U83113 - Human INS-1 winged-helix homolog mRNA, complete cds.
BC012863 - Homo sapiens forkhead box M1, mRNA (cDNA clone MGC:9577 IMAGE:3881055), complete cds.
BC006192 - Homo sapiens forkhead box M1, mRNA (cDNA clone MGC:10704 IMAGE:3833837), complete cds.
BC006529 - Homo sapiens forkhead box M1, mRNA (cDNA clone MGC:10705 IMAGE:3834244), complete cds.
JD404985 - Sequence 386009 from Patent EP1572962.
JD338490 - Sequence 319514 from Patent EP1572962.
JD133911 - Sequence 114935 from Patent EP1572962.
JD294683 - Sequence 275707 from Patent EP1572962.
JD181454 - Sequence 162478 from Patent EP1572962.
JD398103 - Sequence 379127 from Patent EP1572962.
JD287528 - Sequence 268552 from Patent EP1572962.
JD026314 - Sequence 7338 from Patent EP1572962.
JD036252 - Sequence 17276 from Patent EP1572962.
JD501535 - Sequence 482559 from Patent EP1572962.
JD287107 - Sequence 268131 from Patent EP1572962.
AK291206 - Homo sapiens cDNA FLJ77127 complete cds, highly similar to Homo sapiens forkhead box M1 (FOXM1), transcript variant 3, mRNA.
JD297519 - Sequence 278543 from Patent EP1572962.
JD235544 - Sequence 216568 from Patent EP1572962.
JD353486 - Sequence 334510 from Patent EP1572962.
JD508100 - Sequence 489124 from Patent EP1572962.
JD225126 - Sequence 206150 from Patent EP1572962.
JD193350 - Sequence 174374 from Patent EP1572962.
AY542306 - Homo sapiens PIG29 mRNA, complete cds.
JD310246 - Sequence 291270 from Patent EP1572962.
JD374770 - Sequence 355794 from Patent EP1572962.
BT006986 - Homo sapiens forkhead box M1 mRNA, complete cds.
LT978474 - Homo sapiens mRNA for a novel forkhead box M1 isoform FOXM1D (FOXM1 gene).
LT978475 - Homo sapiens mRNA for FOXM1A (FOXM1 gene).
LT978476 - Homo sapiens mRNA for FOXM1B (FOXM1 gene).
LT978477 - Homo sapiens mRNA for FOXM1C (FOXM1 gene).
LT978478 - Homo sapiens mRNA for FOXM1A (FOXM1 gene).
MG600229 - Homo sapiens forkhead box M1-D (FOXM1) mRNA, complete cds, alternatively spliced.
AK313845 - Homo sapiens cDNA, FLJ94473.
JF432495 - Synthetic construct Homo sapiens clone IMAGE:100073716 forkhead box M1 (FOXM1) gene, encodes complete protein.
KJ891182 - Synthetic construct Homo sapiens clone ccsbBroadEn_00576 FOXM1 gene, encodes complete protein.
KJ905746 - Synthetic construct Homo sapiens clone ccsbBroadEn_15416 FOXM1 gene, encodes complete protein.
AB527696 - Synthetic construct DNA, clone: pF1KB6289, Homo sapiens FOXM1 gene for forkhead box M1, without stop codon, in Flexi system.
CU680424 - Synthetic construct Homo sapiens gateway clone IMAGE:100017486 5' read FOXM1 mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q08050 (Reactome details) participates in the following event(s):

R-HSA-4088024 CCNA:CDK1/2 complexes and CCNB1:CDK1 complexes phosphorylate FOXM1
R-HSA-4088141 PP2A-PPP2R2A dephosphorylates FOXM1
R-HSA-4088130 PLK1 binds FOXM1
R-HSA-4088162 FOXM1 binds CDC25A promoter
R-HSA-4088306 FOXM1 binds PLK1 promoter
R-HSA-4088307 FOXM1 binds CCNB1 promoter
R-HSA-4088309 FOXM1 binds CCNB2 promoter
R-HSA-4088439 FOXM1 binds CENPF promoter
R-HSA-4088134 PLK1 phosphorylates FOXM1
R-HSA-69273 Cyclin A/B1/B2 associated events during G2/M transition
R-HSA-156711 Polo-like kinase mediated events
R-HSA-69275 G2/M Transition
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: FKHL16, FOXM1_HUMAN, HFH11, MPP2, NM_021953, NP_068772, O43258, O43259, O43260, Q08050, Q4ZGG7, Q9BRL2, WIN
UCSC ID: uc001qlf.3
RefSeq Accession: NM_021953
Protein: Q08050 (aka FOXM1_HUMAN or FXM1_HUMAN)
CCDS: CCDS8515.1, CCDS8516.1, CCDS8517.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_021953.3
exon count: 9CDS single in 3' UTR: no RNA size: 3551
ORF size: 2292CDS single in intron: no Alignment % ID: 99.97
txCdsPredict score: 4584.00frame shift in genome: no % Coverage: 99.46
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.