Human Gene FLT3 (uc001urw.3)
  Description: Homo sapiens fms-related tyrosine kinase 3 (FLT3), mRNA.
RefSeq Summary (NM_004119): This gene encodes a class III receptor tyrosine kinase that regulates hematopoiesis. This receptor is activated by binding of the fms-related tyrosine kinase 3 ligand to the extracellular domain, which induces homodimer formation in the plasma membrane leading to autophosphorylation of the receptor. The activated receptor kinase subsequently phosphorylates and activates multiple cytoplasmic effector molecules in pathways involved in apoptosis, proliferation, and differentiation of hematopoietic cells in bone marrow. Mutations that result in the constitutive activation of this receptor result in acute myeloid leukemia and acute lymphoblastic leukemia. [provided by RefSeq, Jan 2015].
Transcript (Including UTRs)
   Position: hg19 chr13:28,577,411-28,674,729 Size: 97,319 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr13:28,578,189-28,674,647 Size: 96,459 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:28,577,411-28,674,729)mRNA (may differ from genome)Protein (993 aa)
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-  Comments and Description Text from UniProtKB
  ID: FLT3_HUMAN
DESCRIPTION: RecName: Full=Receptor-type tyrosine-protein kinase FLT3; EC=2.7.10.1; AltName: Full=FL cytokine receptor; AltName: Full=Fetal liver kinase-2; Short=FLK-2; AltName: Full=Fms-like tyrosine kinase 3; Short=FLT-3; AltName: Full=Stem cell tyrosine kinase 1; Short=STK-1; AltName: CD_antigen=CD135; Flags: Precursor;
FUNCTION: Tyrosine-protein kinase that acts as cell-surface receptor for the cytokine FLT3LG and regulates differentiation, proliferation and survival of hematopoietic progenitor cells and of dendritic cells. Promotes phosphorylation of SHC1 and AKT1, and activation of the downstream effector MTOR. Promotes activation of RAS signaling and phosphorylation of downstream kinases, including MAPK1/ERK2 and/or MAPK3/ERK1. Promotes phosphorylation of FES, FER, PTPN6/SHP, PTPN11/SHP-2, PLCG1, and STAT5A and/or STAT5B. Activation of wild-type FLT3 causes only marginal activation of STAT5A or STAT5B. Mutations that cause constitutive kinase activity promote cell proliferation and resistance to apoptosis via the activation of multiple signaling pathways.
CATALYTIC ACTIVITY: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate.
ENZYME REGULATION: Present in an inactive conformation in the absence of bound ligand. FLT3LG binding leads to dimerization and activation by autophosphorylation.
SUBUNIT: Monomer in the absence of bound FLT3LG. Homodimer in the presence of bound FLT3LG. Interacts with FIZ1 following ligand activation (By similarity). Interacts with FES, FER, LYN, FGR, HCK, SRC and GRB2. Interacts with PTPRJ/DEP-1 and PTPN11/SHP2.
INTERACTION: Q9Y6K9:IKBKG; NbExp=2; IntAct=EBI-3946257, EBI-81279;
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein. Endoplasmic reticulum lumen. Note=Constitutively activated mutant forms with internal tandem duplications are less efficiently transported to the cell surface and a significant proportion is retained in an immature form in the endoplasmic reticulum lumen. The activated kinase is rapidly targeted for degradation.
TISSUE SPECIFICITY: Detected in bone marrow, in hematopoietic stem cells, in myeloid progenitor cells and in granulocyte/macrophage progenitor cells (at protein level). Detected in bone marrow, liver, thymus, spleen and lymph node, and at low levels in kidney and pancreas. Highly expressed in T-cell leukemia.
DOMAIN: The juxtamembrane autoregulatory region is important for normal regulation of the kinase activity and for maintaining the kinase in an inactive state in the absence of bound ligand. Upon tyrosine phosphorylation, it mediates interaction with the SH2 domains of numerous signaling partners. In-frame internal tandem duplications (ITDs) result in constitutive activation of the kinase. The activity of the mutant kinase can be stimulated further by FLT3LG binding.
PTM: N-glycosylated, contains complex N-glycans with sialic acid.
PTM: Autophosphorylated on several tyrosine residues in response to FLT3LG binding. FLT3LG binding also increases phosphorylation of mutant kinases that are constitutively activated. Dephosphorylated by PTPRJ/DEP-1, PTPN1, PTPN6/SHP-1, and to a lesser degree by PTPN12. Dephosphorylation is important for export from the endoplasmic reticulum and location at the cell membrane.
PTM: Rapidly ubiquitinated by UBE2L6 and the E3 ubiquitin-protein ligase SIAH1 after autophosphorylation, leading to its proteasomal degradation.
DISEASE: Defects in FLT3 are a cause of acute myelogenous leukemia (AML) [MIM:601626]. AML is a malignant disease in which hematopoietic precursors are arrested in an early stage of development. Note=Somatic mutations that lead to constitutive activation of FLT3 are frequent in AML patients. These mutations fall into two classes, the most common being in-frame internal tandem duplications of variable length in the juxtamembrane region that disrupt the normal regulation of the kinase activity. Likewise, point mutations in the activation loop of the kinase domain can result in a constitutively activated kinase.
MISCELLANEOUS: Can be used as diagnostic tool to establish the exact cause of acute myeloid leukemia, and to determine the optimal therapy.
SIMILARITY: Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/FLT3ID144.html";

-  Primer design for this transcript
 

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-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): FLT3
CDC HuGE Published Literature: FLT3
Positive Disease Associations: leukemia , leukemia, myeloid , Leukemia, Myeloid, Acute , Leukemia, Myeloid|Translocation, Genetic , osteoporosis
Related Studies:
  1. leukemia
    Nanri, T. et al. 2005, Mutations in the receptor tyrosine kinase pathway are associated with clinical outcome in patients with acute myeloblastic leukemia harboring t(8;21)(q22;q22)., Leukemia. 2005 Aug;19(8):1361-6. [PubMed 15902284]
    These results suggest that activating mutations in the RTK pathway play a role in part as an additional event leading to the development of t(8;21) AML. The 6-year cumulative incidence of relapse in patients with RTK pathway mutations was 79.8%, compared with 13.5% in patients lacking such mutations (P=0.0029). Furthermore, the 6-year relapse-free survival in patients with mutations was 18% compared to 60% in those without mutations (P=0.0340), indicating that RTK mutations are associated with the clinical outcome in t(8;21) AML
  2. leukemia, myeloid
    , D324N single-nucleotide polymorphism in the FLT3 gene is associated with higher risk of myeloid leukemias, Genes, chromosomes & cancer. 2006 Apr;45(4):332-7. [PubMed 16320249]
  3. Leukemia, Myeloid, Acute
    Fernando P G Silva , et al. Haematologica 2009 94(11):1546-54, Genome wide molecular analysis of minimally differentiated acute myeloid leukemia., Haematologica 2009 94(11):1546-54. [PubMed 19773259]
    Our results suggest that in patients without RUNX1 mutation, several other molecular aberrations, separately or in combination, contribute to a common minimally differentiated phenotype.
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: FLT3
Diseases sorted by gene-association score: leukemia, acute lymphoblastic* (915), leukemia, acute myeloid* (795), acute myeloid leukemia, flt3-related* (500), acute myeloid leukemia with minimal differentiation* (350), acute myeloblastic leukemia without maturation* (247), acute myeloblastic leukemia with maturation* (202), leukemia, acute lymphoblastic 3* (135), leukemia (113), precursor t-cell acute lymphoblastic leukemia* (82), lymphoblastic leukemia (57), myeloid leukemia (57), acute leukemia (26), cytogenetically normal acute myeloid leukemia (19), myeloid sarcoma (19), acute myeloid leukemia with abnormal bone marrow eosinophils inv(16)(p13q22) or t(16;16)(p13;q22)* (14), core binding factor acute myeloid leukemia (13), hematologic cancer (13), myelodysplastic syndrome (12), acute myeloid leukemia with t(8;21)(q22;q22) translocation* (11), neutrophilia, hereditary (10), chronic myelomonocytic leukemia (8), bone marrow cancer (8), mn1 (8), juvenile myelomonocytic leukemia (8), gastrointestinal stromal tumor (8), leukemia, acute promyelocytic, somatic (8), chronic eosinophilic leukemia (7), acute monocytic leukemia (6), leukemia, chronic myeloid, somatic (6), acute lymphoblastic leukemia, childhood (6), 8p11 myeloproliferative syndrome (5), myelofibrosis with myeloid metaplasia, somatic (5), neonatal leukemia (5), aleukemic leukemia cutis (4), aplastic anemia (3), polycythemia vera, somatic (2), renal cell carcinoma (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.84 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 35.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.5082-0.591 Picture PostScript Text
3' UTR -215.00778-0.276 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR013151 - Immunoglobulin
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR001245 - Ser-Thr/Tyr_kinase_cat_dom
IPR008266 - Tyr_kinase_AS
IPR020635 - Tyr_kinase_cat_dom
IPR016243 - Tyr_kinase_CSF1/PDGF_rcpt
IPR001824 - Tyr_kinase_rcpt_3_CS

Pfam Domains:
PF00047 - Immunoglobulin domain
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine kinase

SCOP Domains:
48726 - Immunoglobulin
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1RJB - X-ray MuPIT 3QS7 - X-ray MuPIT 3QS9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P36888
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0004714 transmembrane receptor protein tyrosine kinase activity
GO:0004896 cytokine receptor activity
GO:0005021 vascular endothelial growth factor-activated receptor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0035259 glucocorticoid receptor binding
GO:0042803 protein homodimerization activity
GO:0043621 protein self-association
GO:0044877 macromolecular complex binding

Biological Process:
GO:0001776 leukocyte homeostasis
GO:0002318 myeloid progenitor cell differentiation
GO:0002328 pro-B cell differentiation
GO:0006468 protein phosphorylation
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008284 positive regulation of cell proliferation
GO:0010243 response to organonitrogen compound
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016310 phosphorylation
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0019221 cytokine-mediated signaling pathway
GO:0030097 hemopoiesis
GO:0030154 cell differentiation
GO:0030183 B cell differentiation
GO:0031100 animal organ regeneration
GO:0035726 common myeloid progenitor cell proliferation
GO:0038084 vascular endothelial growth factor signaling pathway
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0042981 regulation of apoptotic process
GO:0043406 positive regulation of MAP kinase activity
GO:0043410 positive regulation of MAPK cascade
GO:0043552 positive regulation of phosphatidylinositol 3-kinase activity
GO:0046651 lymphocyte proliferation
GO:0046777 protein autophosphorylation
GO:0071345 cellular response to cytokine stimulus
GO:0071385 cellular response to glucocorticoid stimulus
GO:0097028 dendritic cell differentiation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  U02687 - Human growth factor receptor tyrosine kinase (STK-1) mRNA, complete cds.
BC036028 - Homo sapiens fms-related tyrosine kinase 3, mRNA (cDNA clone IMAGE:5272266).
Z26652 - Homo sapiens mRNA for FLT3 receptor tyrosine kinase precursor (FLT3 gene).
JD303226 - Sequence 284250 from Patent EP1572962.
BC126350 - Homo sapiens fms-related tyrosine kinase 3, mRNA (cDNA clone MGC:161628 IMAGE:8992066), complete cds.
BC144039 - Homo sapiens fms-related tyrosine kinase 3, mRNA (cDNA clone MGC:177576 IMAGE:9052559), complete cds.
BC144040 - Homo sapiens fms-related tyrosine kinase 3, mRNA (cDNA clone MGC:177577 IMAGE:9052560), complete cds.
JD160683 - Sequence 141707 from Patent EP1572962.
KJ896823 - Synthetic construct Homo sapiens clone ccsbBroadEn_06217 FLT3 gene, encodes complete protein.
L36162 - Homo sapiens (clone TH3L) receptor tyrosine kinase type III (DID) mRNA.
LF212001 - JP 2014500723-A/19504: Polycomb-Associated Non-Coding RNAs.
MA447578 - JP 2018138019-A/19504: Polycomb-Associated Non-Coding RNAs.
MK758122 - Homo sapiens fms-like tyrosine kinase 3 (FLT3) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04060 - Cytokine-cytokine receptor interaction
hsa04640 - Hematopoietic cell lineage
hsa05200 - Pathways in cancer
hsa05221 - Acute myeloid leukemia

BioCarta from NCI Cancer Genome Anatomy Project
h_erythPathway - Erythrocyte Differentiation Pathway

Reactome (by CSHL, EBI, and GO)

Protein P36888 (Reactome details) participates in the following event(s):

R-HSA-6786789 FLT3LG dimer binds FLT3
R-HSA-8854736 FLT3LG dimer:FLT3 binds FLT3
R-HSA-449836 Other interleukin signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVG9, B7ZLT7, B7ZLT8, CD135, F5H0A0, FLK2, FLT3_HUMAN, NM_004119, NP_004110, P36888, Q13414, STK1
UCSC ID: uc001urw.3
RefSeq Accession: NM_004119
Protein: P36888 (aka FLT3_HUMAN)
CCDS: CCDS31953.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_004119.2
exon count: 24CDS single in 3' UTR: no RNA size: 3848
ORF size: 2982CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 6164.00frame shift in genome: no % Coverage: 99.84
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.