Human Gene BDKRB1 (uc001yfh.3)
  Description: Homo sapiens bradykinin receptor B1 (BDKRB1), mRNA.
RefSeq Summary (NM_000710): Bradykinin, a 9 aa peptide, is generated in pathophysiologic conditions such as inflammation, trauma, burns, shock, and allergy. Two types of G-protein coupled receptors have been found which bind bradykinin and mediate responses to these pathophysiologic conditions. The protein encoded by this gene is one of these receptors and is synthesized de novo following tissue injury. Receptor binding leads to an increase in the cytosolic calcium ion concentration, ultimately resulting in chronic and acute inflammatory responses. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011].
Transcript (Including UTRs)
   Position: hg19 chr14:96,722,547-96,731,100 Size: 8,554 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr14:96,730,020-96,731,081 Size: 1,062 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:96,722,547-96,731,100)mRNA (may differ from genome)Protein (353 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BKRB1_HUMAN
DESCRIPTION: RecName: Full=B1 bradykinin receptor; Short=B1R; Short=BK-1 receptor;
FUNCTION: This is a receptor for bradykinin. Could be a factor in chronic pain and inflammation.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family. Bradykinin receptor subfamily. BDKRB1 sub-subfamily.
WEB RESOURCE: Name=Wikipedia; Note=Bradykinin receptor entry; URL="http://en.wikipedia.org/wiki/Bradykinin_receptor";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): BDKRB1
CDC HuGE Published Literature: BDKRB1
Positive Disease Associations: atherosclerosis, coronary , hypertension , nephropathy, diabetic
Related Studies:
  1. atherosclerosis, coronary
    Dhamrait, S. S. et al. 2003, Variation in bradykinin receptor genes increases the cardiovascular risk associated with hypertension., European heart journal. 2003 Sep;24(18):1672-80. [PubMed 14499231]
    Common variation in the genes for the kinin B(1)and B(2)receptors influences prospective hypertensive coronary risk. These are the first reported human data to suggest a role for the B(1)R in human coronary vascular disease, and the first prospective study to demonstrate a similar role for the B(2)R.
  2. hypertension
    Cui, J. et al. 2005, Sequence variation of bradykinin receptors B1 and B2 and association with hypertension., Journal of hypertension. 2005 Jan;23(1):55-62. [PubMed 15643125]
    These results support the hypothesis that the African-American population is an older population compared with the other samples and the two bradykinin receptors may play a role in blood pressure regulation.
  3. hypertension
    Dhamrait SS 2003, Variation in bradykinin receptor genes increases the cardiovascular risk associated with hypertension., European heart journal. 2003 Sep;24(18):1672-80. [PubMed 14499231]
    Common variation in the genes for the kinin B(1)and B(2)receptors influences prospective hypertensive coronary risk. These are the first reported human data to suggest a role for the B(1)R in human coronary vascular disease, and the first prospective study to demonstrate a similar role for the B(2)R.
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.47 RPKM in Pancreas
Total median expression: 3.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -65.90220-0.300 Picture PostScript Text
3' UTR 0.00190.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR001186 - BK_rcpt_B1
IPR000496 - Brdyknn_rcpt
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P46663
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004947 bradykinin receptor activity
GO:0005515 protein binding
GO:0042277 peptide binding

Biological Process:
GO:0001933 negative regulation of protein phosphorylation
GO:0002687 positive regulation of leukocyte migration
GO:0006950 response to stress
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0009612 response to mechanical stimulus
GO:0016477 cell migration
GO:0019233 sensory perception of pain
GO:0030308 negative regulation of cell growth
GO:0032496 response to lipopolysaccharide
GO:0045776 negative regulation of blood pressure
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043005 neuron projection


-  Descriptions from all associated GenBank mRNAs
  AK309528 - Homo sapiens cDNA, FLJ99569.
KJ950627 - Homo sapiens bradykinin receptor B1 (BDKRB1) mRNA, complete cds.
KJ950628 - Homo sapiens bradykinin receptor B2 (BDKRB2) mRNA, complete cds.
AK291970 - Homo sapiens cDNA FLJ75760 complete cds, highly similar to Homo sapiens bradykinin receptor B1 (BDKRB1), mRNA.
U30271 - Human bradykinin B1 receptor mRNA, 5' untranslated region and partial cds.
JD328034 - Sequence 309058 from Patent EP1572962.
AJ238044 - Homo sapiens mRNA for bradykinin B1 receptor (B1BKR gene).
BC034705 - Homo sapiens bradykinin receptor B1, mRNA (cDNA clone MGC:21220 IMAGE:4753410), complete cds.
JD226914 - Sequence 207938 from Patent EP1572962.
JD520787 - Sequence 501811 from Patent EP1572962.
JD227818 - Sequence 208842 from Patent EP1572962.
JD227819 - Sequence 208843 from Patent EP1572962.
JD227820 - Sequence 208844 from Patent EP1572962.
JD530615 - Sequence 511639 from Patent EP1572962.
JD274540 - Sequence 255564 from Patent EP1572962.
JD274541 - Sequence 255565 from Patent EP1572962.
JD070643 - Sequence 51667 from Patent EP1572962.
JD383980 - Sequence 365004 from Patent EP1572962.
JD108155 - Sequence 89179 from Patent EP1572962.
JD108156 - Sequence 89180 from Patent EP1572962.
JD284078 - Sequence 265102 from Patent EP1572962.
U12512 - Human bradykinin receptor B1 subtype mRNA, complete cds.
KJ896491 - Synthetic construct Homo sapiens clone ccsbBroadEn_05885 BDKRB1 gene, encodes complete protein.
DQ894464 - Synthetic construct Homo sapiens clone IMAGE:100008924; FLH170664.01L; RZPDo839A0399D bradykinin receptor B1 (BDKRB1) gene, encodes complete protein.
DQ891276 - Synthetic construct clone IMAGE:100003906; FLH170668.01X; RZPDo839A03100D bradykinin receptor B1 (BDKRB1) gene, encodes complete protein.
AF117819 - Homo sapiens bradykinin B1 receptor mRNA, partial cds and 3'-untranslated region.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04020 - Calcium signaling pathway
hsa04080 - Neuroactive ligand-receptor interaction
hsa04610 - Complement and coagulation cascades
hsa04810 - Regulation of actin cytoskeleton

Reactome (by CSHL, EBI, and GO)

Protein P46663 (Reactome details) participates in the following event(s):

R-HSA-374331 Bradykinin receptors B1 and B2 bind to bradykinin
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7F5, BKRB1_HUMAN, BRADYB1, NM_000710, NP_000701, P46663, Q546S7, Q8N0Y8
UCSC ID: uc001yfh.3
RefSeq Accession: NM_000710
Protein: P46663 (aka BKRB1_HUMAN or BRB1_HUMAN)
CCDS: CCDS9943.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000710.3
exon count: 3CDS single in 3' UTR: no RNA size: 1319
ORF size: 1062CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2048.00frame shift in genome: no % Coverage: 98.64
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.