hg38 Multiz Alignments of 100 Vertebrates

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Capitalize exons based on show bases

Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 509 in window, 25160915 - 25160927, 13 bps B D Human t----ggatgtgaaat-t---- B D Chimp t----ggatgtgaaat-t---- B D Gorilla t----ggatgtgaaat-t---- B D Orangutan t----ggatgtaaaat-t---- B D Gibbon t----ggatgtgaaat-t---- B D Rhesus t----ggatgtgaaat-t---- B D Crab-eating macaque t----ggatgtgaaat-t---- B D Baboon c----ggatgtgaaat-t---- B D Green monkey c----ggatgtgaaat-t---- B D Marmoset c----ggatgtgaaat-t---- B D Squirrel monkey c----ggatgtgaaat-t---- B D Bushbaby c----tgatgcgaaac-t---- Chinese tree shrew c----agatgtgaaat-g---- B D Squirrel c----ggctgtgaatt-t---- Lesser Egyptian jerboa c----ggcggtgaaat-c---- Prairie vole c----atctgtgaaat-c---- B D Chinese hamster c----gtctgtgaaat-c---- Golden hamster c----gtttgtgaaat-c---- B D Mouse c----gactgtgaaat-c---- B D Rat c----ggctgtgaagt-c---- B D Naked mole-rat c----ggctgcgagat-t---- Chinchilla c----ggctgcgaaat-t---- Brush-tailed rat c----ggctacgaaat-t---- B D Rabbit c-----ggtgtgaaat-g---- B D Pika cgggtgggtgtgaagt-g---- B D Pig c----ggatgtgaaac-t---- B D Alpaca a----ggaagtgaaac-t---- Bactrian camel a----ggaagtgaaac-t---- B D Dolphin c----ggatgcgaaac-t---- Killer whale c----ggatgcgaaac-t---- Tibetan antelope ---------gtgaaac-t---- B D Cow ---------gtgaaac-t---- B D Sheep ---------gtgaaac-t---- Domestic goat ---------gtgaaac-t---- B D Horse c----agatgtgaaac-t---- B D White rhinoceros c----agatgtgaaac-t---- B D Cat c----agatgcgaaac-t---- B D Dog c----gggtgtgaaactt---- B D Ferret c----agatgtgagac-t---- B D Panda c----agatgtgaaac-t---- Pacific walrus c----agacatgaaac-t---- Weddell seal c----agacatgaaac-t---- Black flying-fox c----agacgtgaaac-t---- B D Megabat c----agacgtgaaac-t---- Big brown bat c----agatgtgcaac-t---- David's myotis (bat) c----ggatgtgcaac-t---- D Little brown bat c----agatgtgcaac-t---- B D Hedgehog c----ggatgtgaaac-tggaa Star-nosed mole c----agctgcgaatg-aaaca B D Elephant c----aggtgtgaaat-t---- Cape elephant shrew c----ggatgtgacat-t---- B D Manatee c----agatatgaaat-t---- Cape golden mole c----tgatgagacag-t---- Aardvark c----agatgtgacat-t---- B D Armadillo c----agatgtgacat-t---- B D Opossum c---gaaatgtgaaat-c---- B D Tasmanian devil -----aaatgtgaagt-c---- B D Wallaby t---caaagatgaaat-c---- D Green seaturtle a----ag------aac-a---- D Painted turtle a----ag------aac-a---- D Chinese softshell turtle a----ag------aac-a---- D Spiny softshell turtle a----ag------aac-a---- B D Shrew ====================== Zebra mbuna ====================== Pundamilia nyererei ====================== Burton's mouthbreeder ====================== Princess of Burundi ====================== B D Nile tilapia ====================== D Peregrine falcon ====================== D Saker falcon ====================== Mexican tetra (cavefish) ====================== Spotted gar ====================== B D Coelacanth ====================== B D Zebrafish ====================== B D Budgerigar ====================== D Rock pigeon ====================== Southern platyfish ====================== B D Medaka ====================== D Mallard duck ====================== B D Tetraodon ====================== Yellowbelly pufferfish ====================== B D Fugu ====================== B D Chicken ====================== B D Turkey ====================== B D X. tropicalis ====================== B D Atlantic cod ====================== B D American alligator ====================== B D Lizard ====================== B D Stickleback ====================== B D Guinea pig ====================== B D Platypus ====================== B D Tenrec ====================== Alignment block 2 of 509 in window, 25160928 - 25160936, 9 bps B D Human tgaaa--gg-tt B D Chimp tgaaa--gg-tt B D Gorilla tgaaa--gg-tt B D Orangutan tgaaa--gg-tt B D Gibbon tcaaa--gg-tt B D Rhesus tgaaa--gg-tt B D Crab-eating macaque tgaaa--gg-tt B D Baboon tgaaa--gg-tt B D Green monkey tgaaa--gg-tt B D Marmoset tgaaa--gg-tt B D Squirrel monkey tgaaa--gg-tt B D Bushbaby tgaaa--ggttt Chinese tree shrew tgaaa--ga-tt B D Squirrel taaaa--gg-ct Lesser Egyptian jerboa tgaaa--gg--t Prairie vole tgaaa--gg-tt B D Chinese hamster tgaaa--gg-tt Golden hamster tgaaa--gg-tt B D Mouse tgaaa--gg-tt B D Rat tgaaa--gg-tt B D Naked mole-rat tgaca--gg-ct Chinchilla tgaca--gg-ct Brush-tailed rat tgaca--gg-ct B D Rabbit ggaaaacgg-gt B D Pika accaa--gg-tt B D Pig tgaaa--gg-tt B D Alpaca ttaaa--gg-tt Bactrian camel tgaaa--gg-tt B D Dolphin tgaaa--gg-tt Killer whale tgaaa--gg-tt Tibetan antelope tgaga--gg-tt B D Cow tgaaa--gg-tt B D Sheep tgaaa--gg-tt Domestic goat tgcaa--gg-tt B D Horse tgaaa--gg-tt B D White rhinoceros ggaaa--gg-tt B D Cat tgaaa--gg-tt B D Dog tgcaa--gg-tt B D Ferret ggaaa--gg-tt B D Panda tgaaa--gg-tt Pacific walrus tgaaa--gg-tt Weddell seal tgaaa--gg-tt Black flying-fox tgaaa--gg-tt B D Megabat tgaaa--gg-tt Big brown bat tgaaa--gg-ct David's myotis (bat) tgcaa--gg-ct D Little brown bat tgcaa--gg-ct B D Hedgehog ggaaa--gg-tt Star-nosed mole aaaaa--gc-tt B D Elephant taaaa--gg-tt Cape elephant shrew tgaaa--gg-tt B D Manatee tgaaa--gg-tt Cape golden mole tgaaa--gg-tt Aardvark tgaca--ag-tt B D Armadillo tgaaa--gg-tt B D Opossum aaata--ag-ct B D Tasmanian devil aaatg--aa-tt B D Wallaby aaatg--aa--c D Green seaturtle tgaaa------- D Painted turtle tgaaa------- D Chinese softshell turtle tgaaa------- D Spiny softshell turtle tgaaa------- B D Fugu tgaga--gt-ct B D Shrew ============ Zebra mbuna ============ Pundamilia nyererei ============ Burton's mouthbreeder ============ Princess of Burundi ============ B D Nile tilapia ============ D Peregrine falcon ============ D Saker falcon ============ Mexican tetra (cavefish) ============ Spotted gar ============ B D Coelacanth ============ B D Zebrafish ============ B D Budgerigar ============ D Rock pigeon ============ Southern platyfish ============ B D Medaka ============ D Mallard duck ============ B D Tetraodon ============ Yellowbelly pufferfish ============ B D Chicken ============ B D Turkey ============ B D X. tropicalis ============ B D Atlantic cod ============ B D American alligator ============ B D Lizard ============ B D Stickleback ============ B D Guinea pig ============ B D Platypus ============ B D Tenrec ============ Alignment block 3 of 509 in window, 25160937 - 25160948, 12 bps B D Human ttatttcctaac B D Chimp ttatttcctaac B D Gorilla ttatttcctaac B D Orangutan ttatttcctaac B D Gibbon ttatttcctaac B D Rhesus ttatttcctgac B D Crab-eating macaque ttatttcctgac B D Baboon ttatttcccgac B D Green monkey ttatttcctgac B D Marmoset ttatttcctaac B D Squirrel monkey ttatttcctaac B D Bushbaby ttatttcctatc Chinese tree shrew ttatttcctaac B D Squirrel ttatttcctaac Lesser Egyptian jerboa ttatttcctaac Prairie vole ttatttcctaac B D Chinese hamster ttatttcctaac Golden hamster ttatttcctaac B D Mouse ttatttcctaac B D Rat ttatttcctaac B D Naked mole-rat ttatttcctaac Chinchilla ttatttcctaac Brush-tailed rat ttatttcctaac B D Rabbit ttatttcctaag B D Pika ttatttcctaac B D Pig ttatttcctaac B D Alpaca ttatttcctagc Bactrian camel ttatttcctagc B D Dolphin ttatttcctaac Killer whale ttattgcctaac Tibetan antelope ttatttcttaac B D Cow ttatttcttaac B D Sheep ttatttcttaac Domestic goat ttatttcttaac B D Horse ttatttactaac B D White rhinoceros ttatttcttaac B D Cat ttatttcctaac B D Dog ttatttcctgac B D Ferret ttatttcctaac B D Panda ttatttcctaac Pacific walrus ttatttcctaac Weddell seal ttatttcccaac Black flying-fox ttatttcctaac B D Megabat ttatttcctaac Big brown bat ttatttcctaat David's myotis (bat) ttatttcctaac D Little brown bat ttatttcctaac B D Hedgehog ttatttcttagc Star-nosed mole ttatttcctaac B D Elephant ttatttcctaac Cape elephant shrew ttatttcctatc B D Manatee ttatttcttaac Cape golden mole ttatttcctaac Aardvark ttatttcctaac B D Armadillo ttatttcctaac B D Opossum ttattttctaaa B D Tasmanian devil ttatttcctaaa B D Wallaby ttatttcctaaa B D American alligator tcattccctaac D Green seaturtle tcatttcctaat D Painted turtle tcatttcctaac D Chinese softshell turtle ccgtttcctagc D Spiny softshell turtle ccatttcctagc B D Fugu tcaggccctc-- B D Shrew ============ Zebra mbuna ============ Pundamilia nyererei ============ Burton's mouthbreeder ============ Princess of Burundi ============ B D Nile tilapia ============ D Peregrine falcon ============ D Saker falcon ============ Mexican tetra (cavefish) ============ Spotted gar ============ B D Coelacanth ============ B D Zebrafish ============ B D Budgerigar ============ D Rock pigeon ============ Southern platyfish ============ B D Medaka ============ D Mallard duck ============ B D Tetraodon ============ Yellowbelly pufferfish ============ B D Chicken ============ B D Turkey ============ B D X. tropicalis ============ B D Atlantic cod ============ B D Lizard ============ B D Stickleback ============ B D Guinea pig ============ B D Platypus ============ B D Tenrec ============ Inserts between block 3 and 4 in window B D Opossum 2bp B D Tasmanian devil 5bp B D Wallaby 4bp Alignment block 4 of 509 in window, 25160949 - 25160966, 18 bps B D Human tac---aggcag--cttt-aag-------ag B D Chimp tac---aggcag--cttt-aag-------ag B D Gorilla tac---aggcag--cttt-aag-------ag B D Orangutan tac---aggcag--cttt-aag-------ag B D Gibbon tac---aggcag--cttt-aag-------ag B D Rhesus tac---agacag--cttt-aag-------ag B D Crab-eating macaque tac---agacag--cttt-aag-------ag B D Baboon tac---agacag--cttt-aag-------ag B D Green monkey tac---agacag--attt-aag-------ag B D Marmoset tat---agacag--cttt-aag-------ag B D Squirrel monkey tat---agacag--cttt-aag-------ag B D Bushbaby tac---agacag--cttt-aag-------ag Chinese tree shrew tac---agacta--c-tg-acg-------at B D Squirrel tac---agacag--cttt-aag--------g Lesser Egyptian jerboa t-----aggcgg--tttt-aag-------ag Prairie vole tac---aggcta--acta-tgg-------ag B D Chinese hamster tac---aggcag--ctct-agg-------ag Golden hamster tac---aggcag--ctct-agg-------ag B D Mouse -ac---aggtaa--ctct-aag-------ag B D Rat tac---aggtaa--ctct-aag-------ag B D Naked mole-rat tac---gggcag--cttc-ggc-------ag Chinchilla tac---aggcag--cttc-agt-------ga Brush-tailed rat tac---agacag--cttc-agt-------ga B D Rabbit gac---agg---------------------- B D Pika tac---agc---------------------- B D Pig tac---agg--------t-aag-------ag B D Alpaca tac---agacag--cttt-aag-------ag Bactrian camel tac---agacag--cttt-aag-------ag B D Dolphin tac---agacag--cttt-aaa-------ag Killer whale tac---agacag--ctct-aaa-------ag Tibetan antelope tac---agacag--cttt-aag-------ag B D Cow tac---agacag--cttt-aag-------ag B D Sheep tac---agacag--cttt-aag-------ag Domestic goat tac---agacag--cttt-aag-------ag B D Horse tac---acacag--ctta-aac-------ag B D White rhinoceros tac---acacgg--cggg-aag-------ag B D Cat tac---aggcag--cttt-aag-------ag B D Dog tac---aggcag--cttt-agg-------ag B D Ferret tac---agacag--cttg-aag-------ag B D Panda tac---agacag--cttt-aag-------ag Pacific walrus tac---agacag--cttt-agg-------ag Weddell seal tac---agacgg--cttt-aag-------ag Black flying-fox tac---agacagaacttt-aac-------cg B D Megabat tac---agacagaacttt-aac-------cg Big brown bat tac---aggcag--cttt-cac-------ag D Little brown bat tac---aggcag--cttt-aac-------ag B D Hedgehog tac---a------------------------ Star-nosed mole tac---ag------ctta-aag-------ag B D Elephant tac---agacag--cttt-aaa-------gg Cape elephant shrew tac---aggcag--cctc-ggg--------- B D Manatee tac---agacag--cttt-aag-------gg Cape golden mole taccagggacag--aatt-aag-------gt Aardvark tac---aggcag--cttt-aaggtttaaggt B D Armadillo tac---aag-ag--cttt-aag-------gg B D Opossum --t---ggacag--cttt-agc--------a B D Tasmanian devil aac---agacag--cttt-aat--------g B D Wallaby gtc---agactg--cttt-agt--------g B D American alligator cgc---agactg--cttgtaga-------a- D Green seaturtle agc---aaactg--ctta-ata-------at D Painted turtle agc---aaactg--cttt-ata-------at D Chinese softshell turtle cgc---aaaccg--ctta-aga-------at D Spiny softshell turtle tgc---aaaccg--ctta-aga-------at B D Fugu tac---aaacag--cagg-aag-------tg B D Shrew =============================== Zebra mbuna =============================== Pundamilia nyererei =============================== Burton's mouthbreeder =============================== Princess of Burundi =============================== B D Nile tilapia =============================== D Peregrine falcon =============================== D Saker falcon =============================== Mexican tetra (cavefish) =============================== Spotted gar =============================== B D Coelacanth =============================== B D Zebrafish =============================== B D Budgerigar =============================== D Rock pigeon =============================== Southern platyfish =============================== B D Medaka =============================== D Mallard duck =============================== B D Tetraodon =============================== Yellowbelly pufferfish =============================== B D Chicken =============================== B D Turkey =============================== B D X. tropicalis =============================== B D Atlantic cod =============================== B D Lizard =============================== B D Stickleback =============================== B D Guinea pig =============================== B D Platypus =============================== David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec =============================== Inserts between block 4 and 5 in window B D American alligator 41bp Alignment block 5 of 509 in window, 25160967 - 25160974, 8 bps B D Human -gctgatta B D Chimp -gctgatta B D Gorilla -gctgatta B D Orangutan -gctgatta B D Gibbon -gctgatta B D Rhesus -gctgaata B D Crab-eating macaque -gctgaata B D Baboon -gctgaata B D Green monkey -gctgaata B D Marmoset -gctgaata B D Squirrel monkey -gctgaata B D Bushbaby -gctgaatg Chinese tree shrew -gctgggta B D Squirrel -gttgaatg Lesser Egyptian jerboa -gctggagg Prairie vole -gcttgagg B D Chinese hamster -gcttgagg Golden hamster -gcttgagg B D Mouse -gctagagg B D Rat -gctggagg B D Naked mole-rat -cc-ggagg Chinchilla -ccagaagg Brush-tailed rat -ccagaagg B D Pig -gcgggata B D Alpaca -acagaata Bactrian camel -acagaatc B D Dolphin -gtggaatg Killer whale -gtggaatg Tibetan antelope -tcgggata B D Cow -tcgggata B D Sheep -tcgggata Domestic goat -tcgggata B D Horse -gccgagta B D White rhinoceros -gccgagca B D Cat -gctgacta B D Dog -gctgacta B D Ferret -gctgacta B D Panda -gctgacta Pacific walrus -gctgacta Weddell seal -gctgccta Black flying-fox -actgaaca B D Megabat -actgaaca Big brown bat -gccgag-- D Little brown bat -gccggt-- Star-nosed mole -gccgaaca B D Elephant -gctgaaca B D Manatee -gctgaatg Cape golden mole -gctgagta Aardvark -gctgaaaa B D Armadillo -cctgcggc B D Opossum -gctgaagg B D Tasmanian devil -actgaagg B D Wallaby -actgaagg D Green seaturtle -----aata D Painted turtle -----aata D Chinese softshell turtle -----aata D Spiny softshell turtle -----aata B D Fugu tcccagtt- B D Hedgehog --------- B D Shrew ========= Zebra mbuna ========= Pundamilia nyererei ========= Burton's mouthbreeder ========= Princess of Burundi ========= B D Nile tilapia ========= D Peregrine falcon ========= D Saker falcon ========= Mexican tetra (cavefish) ========= Spotted gar ========= B D Coelacanth ========= B D Zebrafish ========= B D Budgerigar ========= D Rock pigeon ========= Southern platyfish ========= B D Medaka ========= D Mallard duck ========= B D Tetraodon ========= Yellowbelly pufferfish ========= B D Chicken ========= B D Turkey ========= B D X. tropicalis ========= B D Atlantic cod ========= B D American alligator ========= B D Lizard ========= B D Stickleback ========= B D Guinea pig ========= Cape elephant shrew --------- B D Platypus ========= David's myotis (bat) NNNNNNNNN B D Rabbit --------- B D Pika --------- B D Tenrec ========= Inserts between block 5 and 6 in window D Green seaturtle 4bp D Painted turtle 67bp D Chinese softshell turtle 1bp D Spiny softshell turtle 1bp Alignment block 6 of 509 in window, 25160975 - 25161002, 28 bps B D Human tc--tg----------------c-cac-------g----------------------------a--c--- B D Chimp tc--tg----------------c-cac-------g----------------------------a--c--- B D Gorilla tc--tg----------------c-cac-------g----------------------------a--c--- B D Orangutan tc--tg----------------c-cac-------g----------------------------a--cc-- B D Gibbon tc--tg----------------c-cac-------g----------------------------g--cc-- B D Rhesus tc--tg----------------c-cgc-------g----------------------------a--cc-- B D Crab-eating macaque tc--tg----------------c-cgc-------g----------------------------a--cc-- B D Baboon tc--tg----------------c-cgc-------g----------------------------a--cc-- B D Green monkey tc--tg----------------c-cgc-------g----------------------------a--cc-- B D Marmoset tc--tg----------------c-ctc-------g----------------------------a--cc-- B D Squirrel monkey tc--tg----------------c-ctc-------g----------------------------a--cc-- B D Bushbaby ---------------------------------------------------------------------- Chinese tree shrew tc--tg----------------c-cgcttccaagg----------------------------a--cctg B D Squirrel tc--tgtcgctaccaccagcccc-agc-------g----------------------------a--ga-- Lesser Egyptian jerboa tc----------------------ggc-------c----------------------------g--cc-- Prairie vole tc--gg----------------c-ggc-------g----------------------------a--gt-- B D Chinese hamster tc--tg----------------t-ggc-------g----------------------------a--gt-- Golden hamster tc--------------------t-ggc-------g----------------------------a--gt-- B D Mouse tc-------------------------------------------------------------a--tc-- B D Rat tc-------------------------------------------------------------aggtg-- B D Naked mole-rat ----------------------c-gc-----------------------------------------g-- Chinchilla ----------------------c-gat-------g----------------------------g--ag-- Brush-tailed rat ----------------------c-gcg-------g----------------------------g--ag-- B D Rabbit ----------------------c-ggc-------g----------------------------c------ B D Pika ----------------------a-ggc-------g----------------------------t------ B D Pig tc--tggcgccc----------a-cac-------a----------------------------g--cctg B D Alpaca cc--tgccacca----------t-cac-------c----------------------------g--cctg Bactrian camel cc--tgccacca----------t-cac-------c----------------------------g--cctg B D Dolphin cc--tggcgcca----------t-cac-------c----------------------------g--cctg Killer whale cc--tggcgcca----------t-cac-------c----------------------------g--cctg Tibetan antelope cc--tggcgcca----------t-cac-------t----------------------------g--cctg B D Cow cc--tggcgcca----------t-cac-------t----------------------------g--cctg B D Sheep cc--tggcgcca----------t-cac-------t----------------------------g--cctg Domestic goat cc--tggcgcca----------t-cac-------t----------------------------g--cctg B D Horse tc--tgccgctg----------t-cac-------c----------------------------g--cccg B D White rhinoceros tc--cgctgcta----------t-cac-------g----------------------------g--cccg B D Cat tctggg--gcta----------taccc-------g----------------------------g--cctg B D Dog cc--gg--gctgcccc------c-cac-------c----------------------------g--cctg B D Ferret tg--gg--gcca----------t-cac-------g----------------------------g--cctg B D Panda tc--gg--gcta----------t-cgc-------c----------------------------g--cctg Pacific walrus tc--gg--ggta----------t-cac-------c----------------------------g--cctg Weddell seal tc--gg--ccta----------t-cac-------c----------------------------g--cctg Black flying-fox tc--cgctgctc----------c-cac-------c----------------------------g--cctg B D Megabat tc--cgctgctc----------c-cac-------c----------------------------g--cctg Big brown bat -----g--gctc----------c-ca-------------------------------------c--ccgg D Little brown bat -----gccgcgc----------c-cac-------cgccggagcccggagcccggagcccggagc--ccgg B D Hedgehog --------caca----------g-ctc-------t----------------------------------- Star-nosed mole tc--tgcccgga----------g-ccc-------t-------------------------------tctg B D Elephant cc--tgccgcta----------t-cac-------c----------------------------t--cctg Cape elephant shrew ------------------------cgc-------c----------------------------t--cccc B D Manatee cc--tgctgcta----------t-cac-------c----------------------------t--ccgg Cape golden mole tc--tgctgc-a----------t-cac-------c----------------------------t--cc-- Aardvark tc--cgctgcta----------t-cac-------c----------------------------t--cctg B D Armadillo tc--t-----------------------------c----------------------------c--ccct B D Opossum ca--tg--gttgc---------t-gag-------g----------------------------a--tttg B D Tasmanian devil ca--tg--gctgt---------t-gag-------g----------------------------g--ttta B D Wallaby ca--tg--gcta----------t-gag-------g----------------------------g--tttg D Green seaturtle ---------------------------------------------------------------------- D Chinese softshell turtle ---------------------------------------------------------------------- D Spiny softshell turtle ---------------------------------------------------------------------- B D Fugu ---------------------------------------------------------------------- B D Shrew ====================================================================== Zebra mbuna ====================================================================== Pundamilia nyererei ====================================================================== Burton's mouthbreeder ====================================================================== Princess of Burundi ====================================================================== B D Nile tilapia ====================================================================== D Peregrine falcon ====================================================================== D Saker falcon ====================================================================== Mexican tetra (cavefish) ====================================================================== Spotted gar ====================================================================== B D Coelacanth ====================================================================== B D Zebrafish ====================================================================== B D Budgerigar ====================================================================== D Rock pigeon ====================================================================== Southern platyfish ====================================================================== B D Medaka ====================================================================== D Mallard duck ====================================================================== B D Tetraodon ====================================================================== Yellowbelly pufferfish ====================================================================== B D Chicken ====================================================================== B D Turkey ====================================================================== B D X. tropicalis ====================================================================== D Painted turtle ====================================================================== B D Atlantic cod ====================================================================== B D American alligator ====================================================================== B D Lizard ====================================================================== B D Stickleback ====================================================================== B D Guinea pig ====================================================================== B D Platypus ====================================================================== David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec ====================================================================== Human -----------c--cccc-aggctgggaggc- Chimp -----------c--cccc-aggctgggaggc- Gorilla -----------c--cccc-aggctgggaggc- Orangutan -------accac--cccc-aggctgggaagc- Gibbon -------accac--cccc-aggctgggaggc- Rhesus -------accgc--cccc-aggctggga---- Crab-eating macaque -------accgc--cccc-aggctggga---- Baboon -------accgc--cccc-aggctgggc---- Green monkey -------accgc--cccc-aggctggga---- Marmoset -------atctg--cccc-aggctgggaggc- Squirrel monkey -------atctgc-cccc-cggctgggaggc- Bushbaby -----------c--ccgc-------------- Chinese tree shrew agtgagtagcac--actc-aggctgggaggc- Squirrel -------agctg--g-cc-aggcagagg---- Lesser Egyptian jerboa -------cccca--gccc-aggcgggga---- Prairie vole -------agctc--gccc-atgcaggga---- Chinese hamster -------ggctc--gccc-atgcaggga---- Golden hamster -------ggctc--gccc-atgcaggga---- Mouse -------agctc--gccc-atgcaggga---- Rat -------ctctc--gccc-atgcaggga---- Naked mole-rat -------ggctt--g--------gg------- Chinchilla -------ggctg--g--------cgggc---- Brush-tailed rat -------ggctg--g--------ggggc---- Rabbit -----------------------gggga---- Pika -----------------------gaaga---- Pig agcg-------t--accc-gggctg-gaggc- Alpaca ggcaactc-cac--accc-aggctgcgatgt- Bactrian camel ggcaactc-cac--acct-aggctgcgacgt- Dolphin ggcgaggc-ctc--actc-aggccgcgaggc- Killer whale ggcgaggc-ctc--accc-aggccgcgaggc- Tibetan antelope ggcaagtc-ctc--accc-gggctgcgaggc- Cow ggcgaatc-ctc--accc-aggctgcgaggc- Sheep ggcaagtc-ctc--accc-gggctgcgaggc- Domestic goat ggcaagtc-ctc--accc-gggctgcgaggc- Horse --------------------ggctgcgaggc- White rhinoceros agcgaacagcac--accc-aggctgcgaggc- Cat agcgagtagcac--accc-aggctgggaggc- Dog ggcgaggagcac--atccggggctggggggg- Ferret agcgaggagcac--accc-aggccgggaggc- Panda agcgaggagcac--accc-aggctgggaggc- Pacific walrus agcgaggggcac--accc-aggcagggaggc- Weddell seal agcgaggagccc--accc-aggctgggaggc- Black flying-fox agcgagcagcac--accc-aggctgtgaggt- Megabat agcgagcagcac--accc-agcctgggaggt- Big brown bat agcgagtggccc--agcc-aggctgggaggc- Little brown bat agcccggagccc--ggac-aggctggaggcc- Hedgehog -------------------agg----gggct- Star-nosed mole ggtgagcaaatc--acca-agg----gcgat- Elephant agcgagtaccag--agcc-aggctgggaggc- Cape elephant shrew agcgaggagcgc--agcc-aggcctgggggt- Manatee agagagtaccac--agcg-aggctgggaggc- Cape golden mole ---------cac--ctcc-aggctgggcggc- Aardvark agcgagtaccac--accc-agactgggaggc- Armadillo agagagtcccac--gccc-cgg-tgggaggc- Opossum actatgtagca---ccca-agcctgggaaat- Tasmanian devil actatctaacacatccca-agcctgggaaat- Wallaby actatgtagcac--ccca-ag-ctgagagat- Green seaturtle -----ttagtaa--caac-ataataagtgat- Chinese softshell turtle -----ttagtaa--cgac-agaataagtgac- Spiny softshell turtle -----ttagtaa--caac-agaataagtgac- Fugu -------ggacc--acct-ggtccagaaagac Shrew ================================ Zebra mbuna ================================ Pundamilia nyererei ================================ Burton's mouthbreeder ================================ Princess of Burundi ================================ Nile tilapia ================================ Peregrine falcon ================================ Saker falcon ================================ Mexican tetra (cavefish) ================================ Spotted gar ================================ Coelacanth ================================ Zebrafish ================================ Budgerigar ================================ Rock pigeon ================================ Southern platyfish ================================ Medaka ================================ Mallard duck ================================ Tetraodon ================================ Yellowbelly pufferfish ================================ Chicken ================================ Turkey ================================ X. tropicalis ================================ Painted turtle ================================ Atlantic cod ================================ American alligator ================================ Lizard ================================ Stickleback ================================ Guinea pig ================================ Platypus ================================ David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Tenrec ================================ Inserts between block 6 and 7 in window D Green seaturtle 6bp D Chinese softshell turtle 6bp D Spiny softshell turtle 6bp Alignment block 7 of 509 in window, 25161003 - 25161013, 11 bps B D Human ggcag---------cagggc----- B D Chimp ggcag---------cagggc----- B D Gorilla ggcag---------cagggc----- B D Orangutan agcag---------cagggc----- B D Gibbon ggcag---------cagggc----- B D Rhesus ggcag---------cagggc----- B D Crab-eating macaque ggcag---------cagggc----- B D Baboon ggcag---------cagggt----- B D Green monkey ggcag---------cagggc----- B D Marmoset ggcag---------cagggc----- B D Squirrel monkey ggcgg---------cagggc----- B D Bushbaby ggcag---------cagggc----- Chinese tree shrew ggcag---------gggggc----- B D Squirrel ggcag---------gcgagc----- Lesser Egyptian jerboa ggcag---------gagagc----- Prairie vole g------------------------ B D Chinese hamster g------------------------ Golden hamster g------------------------ B D Mouse g------------------------ B D Rat g------------------------ Chinchilla a------------------------ Brush-tailed rat a------------------------ B D Rabbit g------------------------ B D Pika g------------------------ B D Pig ggcag---------gagggc----- B D Alpaca ggcag---------gaagga----- Bactrian camel ggcag---------gaagga----- B D Dolphin ggcag---------gagggc----- Killer whale ggcag---------gagggc----- Tibetan antelope gacag---------gaggac----- B D Cow ggtag---------gagggc----- B D Sheep gacag---------gaggac----- Domestic goat gacag---------gaggac----- B D Horse ggcag---------gagggc----- B D White rhinoceros ggcag---------ga-ggc----- B D Cat ggcag---------gagggc----- B D Dog ggcgg---------gagggc----- B D Ferret ggtgg---------gagggc----- B D Panda ggcag---------gagggc----- Pacific walrus ggcag---------gagggc----- Weddell seal ggccg---------gagggc----- Black flying-fox ggcag---------gtgggc----- B D Megabat ggcag---------gtgggc----- Big brown bat g---g---------gcaggc----- D Little brown bat ---------------ccggc----- B D Hedgehog gg-gg---------gaggac----- Star-nosed mole ggcgt---------ggggac----- B D Elephant ggcag---------gaggac----- Cape elephant shrew ggc-g---------gggtgc----- B D Manatee ggc-a---------ggcggc----- Cape golden mole gga-g---------gggcgc----- Aardvark ggcag---------gggagc----- B D Armadillo agctg---------gagggc----- B D Opossum aggagatgggaatgcaggga----- B D Tasmanian devil ggaag------atacagggg----- B D Wallaby gggaggtaggaatgcaaggg----- D Saker falcon gccag---------caggac----- D Peregrine falcon gccag---------caggac----- D Green seaturtle ---aa---------ctgtat----- D Chinese softshell turtle ---ga---------ctgtat----- D Spiny softshell turtle ---ga---------ctgtat----- B D Fugu --------------cagatcacagc B D Shrew ========================= Zebra mbuna ========================= Pundamilia nyererei ========================= Burton's mouthbreeder ========================= Princess of Burundi ========================= B D Nile tilapia ========================= Mexican tetra (cavefish) ========================= Spotted gar ========================= B D Coelacanth ========================= B D Zebrafish ========================= B D Budgerigar ========================= D Rock pigeon ========================= Southern platyfish ========================= B D Medaka ========================= D Mallard duck ========================= B D Tetraodon ========================= Yellowbelly pufferfish ========================= B D Chicken ========================= B D Turkey ========================= B D X. tropicalis ========================= D Painted turtle ========================= B D Atlantic cod ========================= B D American alligator ========================= B D Lizard ========================= B D Stickleback ========================= B D Guinea pig ========================= B D Naked mole-rat ------------------------- B D Platypus ========================= David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec ========================= Inserts between block 7 and 8 in window B D Pig 5bp D Green seaturtle 3bp D Chinese softshell turtle 3bp D Spiny softshell turtle 3bp Alignment block 8 of 509 in window, 25161014 - 25161022, 9 bps B D Human aggg----------------------ga-gag------- B D Chimp aggg----------------------ga-gag------- B D Gorilla aggg----------------------ga-gag------- B D Orangutan aggg----------------------ga-gag------- B D Gibbon aggg----------------------ga-gag------- B D Rhesus aggg----------------------ga-gag------- B D Crab-eating macaque aggg----------------------ga-gag------- B D Baboon aggg----------------------ga-gag------- B D Green monkey aggg----------------------ga-gag------- B D Marmoset tggg----------------------ga-ggg------- B D Squirrel monkey tggg----------------------ga-ggg------- B D Bushbaby gggt----------------------gt-ggg------- Chinese tree shrew aaat----------------------ga-gag------- B D Squirrel cag------------------------------------ Lesser Egyptian jerboa aggc----------------------ga-ggg------- B D Pig agga----------------------ga-ggg------- B D Alpaca agga----------------------aa-gga------- Bactrian camel agga----------------------aa-gga------- B D Dolphin agga----------------------gg-tgg------- Killer whale agga----------------------gg-tgg------- Tibetan antelope agaa----------------------ga-gag------- B D Cow agaa----------------------ga-gag------- B D Sheep agaa----------------------ga-gag------- Domestic goat agaa----------------------ga-gag------- B D Horse aggc----------------------ga-gga------- B D White rhinoceros aggc----------------------ga-gga------- B D Cat aggg----------------------ga-gga------- B D Dog agga----------------------gg-gca------- B D Ferret aggc----------------------ga-gga------- B D Panda aggc----------------------ga-gga------- Pacific walrus aggc----------------------gaggga------- Weddell seal gggc----------------------ga-gga------- Black flying-fox aggc----------------------aa-gga------- B D Megabat aggc----------------------aa-gga------- Big brown bat ccgc----------------------ga-gag------- D Little brown bat ccgc----------------------ga-gag------- B D Hedgehog gagg----------------------------------- Star-nosed mole aagcagtggggcttcggggcgctccc------------- B D Elephant tggg----------------------gc-agc------- Cape elephant shrew aggg----------------------gc-cgc------- B D Manatee aggg----------------------gc-agc------- Cape golden mole aggg----------------------gc-agt------- Aardvark tggt----------------------gc-agc------- B D Armadillo cggg----------------------ga-gga------- B D Opossum gaag----------------------ga-gag------- B D Tasmanian devil atag----------------------ga-aag------- B D Wallaby gaag----------------------ga-gag------- B D Fugu ------------------------------ggtgaccat Golden hamster --------------------------------------- B D Rat --------------------------------------- B D Shrew ======================================= B D Mouse --------------------------------------- Zebra mbuna ======================================= Pundamilia nyererei ======================================= Burton's mouthbreeder ======================================= Princess of Burundi ======================================= B D Nile tilapia ======================================= D Peregrine falcon --------------------------------------- D Saker falcon --------------------------------------- Mexican tetra (cavefish) ======================================= Spotted gar ======================================= B D Coelacanth ======================================= B D Zebrafish ======================================= B D Budgerigar ======================================= D Rock pigeon ======================================= Southern platyfish ======================================= B D Medaka ======================================= D Mallard duck ======================================= B D Tetraodon ======================================= D Chinese softshell turtle ======================================= Yellowbelly pufferfish ======================================= B D Chicken ======================================= B D Turkey ======================================= B D X. tropicalis ======================================= D Painted turtle ======================================= B D Atlantic cod ======================================= B D American alligator ======================================= B D Lizard ======================================= B D Stickleback ======================================= B D Guinea pig ======================================= Brush-tailed rat --------------------------------------- B D Naked mole-rat --------------------------------------- Chinchilla --------------------------------------- Prairie vole --------------------------------------- B D Chinese hamster --------------------------------------- B D Platypus ======================================= D Spiny softshell turtle ======================================= D Green seaturtle ======================================= David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Rabbit --------------------------------------- B D Pika --------------------------------------- B D Tenrec ======================================= Inserts between block 8 and 9 in window B D Dog 5bp B D Fugu 1bp Alignment block 9 of 509 in window, 25161023 - 25161026, 4 bps B D Human ca-----ag B D Chimp ca-----ag B D Gorilla ca-----ag B D Orangutan ca-----ag B D Gibbon ca-----ag B D Rhesus ca-----ag B D Crab-eating macaque ca-----ag B D Baboon ca-----ag B D Green monkey ca-----ag B D Marmoset ca-----ag B D Squirrel monkey ca-----ag B D Bushbaby ca-----gg Chinese tree shrew --------g B D Squirrel --------g Lesser Egyptian jerboa ca------g Prairie vole --------g B D Chinese hamster --------g Golden hamster --------g B D Mouse --------g B D Rat --------g Chinchilla --------g Brush-tailed rat --------g B D Pika --------g B D Pig gg------- B D Alpaca gc------g Bactrian camel ga------g B D Dolphin gg------- Killer whale gg------- Tibetan antelope gc------- B D Cow gc------- B D Sheep gc------- Domestic goat gc------- B D Horse gc----ggg B D White rhinoceros gc----ggg B D Cat ga-----ag B D Dog ga----ggg B D Ferret ga------- B D Panda ga----ggg Pacific walrus ga----ggg Weddell seal ga----ggg Black flying-fox --------g B D Megabat ga-----gg Big brown bat --------g D Little brown bat --------g B D Elephant ga--aaagg Cape elephant shrew -----aagg B D Manatee gaggagagg Cape golden mole -----gagg Aardvark gaggagagg B D Armadillo ggggagagg B D Opossum ggagaagaa B D Tasmanian devil gg-gcagaa B D Wallaby ggagcagaa D Saker falcon --actaaag D Peregrine falcon --actaaag B D American alligator --agtgaag D Green seaturtle --agtgaaa D Chinese softshell turtle --agtgaaa D Spiny softshell turtle --agtgaaa B D Fugu -----aacg Southern platyfish -----catg Star-nosed mole --------- B D Hedgehog --------- B D Shrew ========= Zebra mbuna ========= Pundamilia nyererei ========= Burton's mouthbreeder ========= Princess of Burundi ========= B D Nile tilapia ========= Mexican tetra (cavefish) ========= Spotted gar ========= B D Coelacanth ========= B D Zebrafish ========= B D Budgerigar ========= D Rock pigeon ========= B D Medaka ========= D Mallard duck ========= B D Tetraodon ========= Yellowbelly pufferfish ========= B D Chicken ========= B D Turkey ========= B D X. tropicalis ========= D Painted turtle ========= B D Atlantic cod ========= B D Lizard ========= B D Stickleback ========= B D Guinea pig ========= B D Naked mole-rat --------- B D Platypus ========= David's myotis (bat) NNNNNNNNN B D Rabbit --------- B D Tenrec ========= Inserts between block 9 and 10 in window D Saker falcon 9bp D Peregrine falcon 9bp B D American alligator 14bp D Green seaturtle 12bp D Chinese softshell turtle 12bp D Spiny softshell turtle 12bp Alignment block 10 of 509 in window, 25161027 - 25161039, 13 bps B D Human ggg--ctttggggtc------------------ B D Chimp ggg--ctttggggtc------------------ B D Gorilla ggg--ctttggggtc------------------ B D Orangutan ggg--ctttggggtc------------------ B D Gibbon gag--ctttgggatc------------------ B D Rhesus ggg--ctttggggtc------------------ B D Crab-eating macaque ggg--ctttggggtc------------------ B D Baboon ggg--ctttggggtc------------------ B D Green monkey ggg--ctttggggtc------------------ B D Marmoset ggg--ctttggggtc------------------ B D Squirrel monkey ggg--ctttggggtc------------------ B D Bushbaby gtg--ctttagggac------------------ Chinese tree shrew ggt--cttcagggac------------------ B D Squirrel ggg--ctttaggatg------------------ Lesser Egyptian jerboa ggg--ctctcgggcg------------------ Prairie vole ggg---ctcggggtg------------------ B D Chinese hamster gag---cttggagtg------------------ Golden hamster gag---cttggagtg------------------ B D Mouse ggg--ccttggaatg------------------ B D Rat ggg--ccttggagtg------------------ Chinchilla ggg---ctgcgggcg------------------ Brush-tailed rat gag---ctgcgggga------------------ B D Rabbit ------------gcg------------------ B D Pika ccg---ccccgcgcg------------------ B D Pig -----ctttggggtc------------------ B D Alpaca gag--ctttagggtt------------------ Bactrian camel gag--ctttagggtt------------------ B D Dolphin -----ctttggggtc------------------ Killer whale -----ctttggggtc------------------ Tibetan antelope -----cttcggggtc------------------ B D Cow -----cttcagggtc------------------ B D Sheep -----cttcggggtc------------------ Domestic goat -----cttcggggtc------------------ B D Horse ga----cttcgggcc------------------ B D White rhinoceros g-----cgtagggcc------------------ B D Cat ggg--ccttagggtc------------------ B D Dog ggg--ccttc-cgtg------------------ B D Ferret -----------ggtc------------------ B D Panda ggg--ccttagggtc------------------ Pacific walrus ggg--ccttagggtc------------------ Weddell seal ggg--ccttagggtc------------------ Black flying-fox gag--ctttagggtc------------------ B D Megabat gag--ctttagggtc------------------ Big brown bat ggg--ttcgggggtc------------------ D Little brown bat ggg--ctcaggggcc------------------ B D Elephant tgg--ctttggggcc------------------ Cape elephant shrew tga------------------------------ B D Manatee ggg--ctttggggcc------------------ Cape golden mole agg----------cc------------------ Aardvark gggggctctgcggcc------------------ B D Armadillo agg-gctctggggag------------------ B D Opossum ggg--ccttggcggc------------------ B D Tasmanian devil ggg--aactggggcc------------------ B D Wallaby atg--actcagggat------------------ D Saker falcon ggg--tagcgg---------------------- D Peregrine falcon ggg--tagcgg---------------------- B D American alligator gga--tcgtgaagct------------------ D Green seaturtle gga--tcttgaagct------------------ D Painted turtle gga--tcttgaagct------------------ D Chinese softshell turtle ggc--tcttgaagct------------------ D Spiny softshell turtle gga--tcttgaagct------------------ B D Fugu ----------gaaccgtcatcatccctgaaccc Southern platyfish ----------gagcca----------tggatat Star-nosed mole --------------------------------- B D Hedgehog --------------------------------- B D Shrew ================================= Zebra mbuna ================================= Pundamilia nyererei ================================= Burton's mouthbreeder ================================= Princess of Burundi ================================= B D Nile tilapia ================================= Mexican tetra (cavefish) ================================= Spotted gar ================================= B D Coelacanth ================================= B D Zebrafish ================================= B D Budgerigar ================================= D Rock pigeon ================================= B D Medaka ================================= D Mallard duck ================================= B D Tetraodon ================================= Yellowbelly pufferfish ================================= B D Chicken ================================= B D Turkey ================================= B D X. tropicalis ================================= B D Atlantic cod ================================= B D Lizard ================================= B D Stickleback ================================= B D Guinea pig ================================= B D Naked mole-rat --------------------------------- B D Platypus ================================= David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec ================================= Inserts between block 10 and 11 in window Brush-tailed rat 1bp Alignment block 11 of 509 in window, 25161040 - 25161041, 2 bps B D Human ga B D Chimp ga B D Gorilla ga B D Orangutan ga B D Gibbon ga B D Rhesus ga B D Crab-eating macaque ga B D Baboon ga B D Green monkey ga B D Marmoset ga B D Squirrel monkey ga B D Bushbaby ga Chinese tree shrew gc B D Squirrel ga Lesser Egyptian jerboa ca Chinchilla ga Brush-tailed rat gg B D Pig gg B D Alpaca ga Bactrian camel ga B D Dolphin ga Killer whale ga Tibetan antelope aa B D Cow aa B D Sheep aa Domestic goat aa B D Horse ga B D White rhinoceros ga B D Cat ga B D Dog ga B D Ferret ga B D Panda ga Pacific walrus ga Weddell seal ga Black flying-fox ga B D Megabat ga Big brown bat gc D Little brown bat gc B D Elephant gg B D Manatee gg Cape golden mole gg Aardvark gg B D Armadillo ga B D Opossum tg B D Tasmanian devil ta B D Wallaby gg B D American alligator a- D Green seaturtle aa D Painted turtle aa D Chinese softshell turtle aa D Spiny softshell turtle aa B D X. tropicalis ga B D Fugu gc Southern platyfish ga Star-nosed mole -- Golden hamster -- B D Hedgehog -- B D Rat -- B D Shrew == B D Mouse -- Zebra mbuna == Pundamilia nyererei == Burton's mouthbreeder == Princess of Burundi == B D Nile tilapia == D Peregrine falcon -- D Saker falcon -- Mexican tetra (cavefish) == Spotted gar == B D Coelacanth == B D Zebrafish == B D Budgerigar == D Rock pigeon == B D Medaka == D Mallard duck == B D Tetraodon == Yellowbelly pufferfish == B D Chicken == B D Turkey == B D Atlantic cod == B D Lizard == B D Stickleback == B D Guinea pig == B D Naked mole-rat -- Prairie vole -- Cape elephant shrew -- B D Chinese hamster -- B D Platypus == David's myotis (bat) NN B D Rabbit -- B D Pika -- B D Tenrec == Inserts between block 11 and 12 in window B D X. tropicalis 1bp Alignment block 12 of 509 in window, 25161042 - 25161044, 3 bps B D Human c-c--t B D Chimp c-c--t B D Gorilla c-c--t B D Orangutan c-c--t B D Gibbon c-c--t B D Rhesus c-c--t B D Crab-eating macaque c-c--t B D Baboon c-c--t B D Green monkey c-c--t B D Marmoset c-c--t B D Squirrel monkey c-c--t B D Bushbaby c-t--t Chinese tree shrew c-t--t B D Squirrel c-t--t Lesser Egyptian jerboa c-t--t Chinchilla c-t--g Brush-tailed rat c-t--t B D Pig c-t--t B D Alpaca c-t--t Bactrian camel c-t--t B D Dolphin c-t--t Killer whale c-t--t Tibetan antelope c-t--t B D Cow c-t--t B D Sheep c-c--t Domestic goat c-t--t B D Horse c-t--- B D White rhinoceros c-t--c B D Cat c-t--t B D Dog c-t--t B D Ferret c-t--t B D Panda c-t--t Pacific walrus c-tccc Weddell seal c-t--t Black flying-fox c-t--- B D Megabat c-t--- Big brown bat c-t--- D Little brown bat c-t--- B D Elephant c-t--t B D Manatee c-t--t Cape golden mole c-t--t Aardvark c-t--t B D Armadillo cgt--c B D Opossum c-c--t B D Tasmanian devil c-t--t B D Wallaby c-t--t D Mallard duck --c--t B D American alligator c-c--t D Green seaturtle c-t--t D Painted turtle c-t--t D Chinese softshell turtle t-c--t D Spiny softshell turtle t-c--t B D X. tropicalis c-t--- B D Fugu c-t--t Southern platyfish a-a--t Star-nosed mole ------ Golden hamster ------ B D Hedgehog ------ B D Rat ------ B D Shrew ====== B D Mouse ------ Zebra mbuna ====== Pundamilia nyererei ====== Burton's mouthbreeder ====== Princess of Burundi ====== B D Nile tilapia ====== D Peregrine falcon ------ D Saker falcon ------ Mexican tetra (cavefish) ====== Spotted gar ====== B D Coelacanth ====== B D Zebrafish ====== B D Budgerigar ====== D Rock pigeon ====== B D Medaka ====== B D Tetraodon ====== Yellowbelly pufferfish ====== B D Chicken ====== B D Turkey ====== B D Atlantic cod ====== B D Lizard ====== B D Stickleback ====== B D Guinea pig ====== B D Naked mole-rat ------ Prairie vole ------ Cape elephant shrew ------ B D Chinese hamster ------ B D Platypus ====== David's myotis (bat) NNNNNN B D Rabbit ------ B D Pika ------ B D Tenrec ====== Inserts between block 12 and 13 in window D Mallard duck 3bp Alignment block 13 of 509 in window, 25161045 - 25161047, 3 bps B D Human cct B D Chimp cct B D Gorilla cct B D Orangutan cct B D Gibbon cct B D Rhesus ccc B D Crab-eating macaque ccc B D Baboon ccc B D Green monkey ccc B D Marmoset ccc B D Squirrel monkey ccc B D Bushbaby ccc Chinese tree shrew ccc B D Squirrel ccc Lesser Egyptian jerboa ccc Chinchilla cct Brush-tailed rat ccc B D Pig -cc B D Alpaca ccc Bactrian camel ccc B D Dolphin ccc Killer whale ccc Tibetan antelope tcc B D Cow tcc B D Sheep tcc Domestic goat tcc B D Horse tcc B D White rhinoceros ccc B D Cat cct B D Dog ccc B D Ferret cct B D Panda cct Pacific walrus ccc Weddell seal ccc Black flying-fox tcc B D Megabat tcc Big brown bat tcg D Little brown bat tcc B D Elephant cc- B D Manatee cc- Cape golden mole cc- Aardvark tc- B D Armadillo cc- B D Opossum tcc B D Tasmanian devil ctc B D Wallaby cct D Saker falcon -cg D Peregrine falcon -cg D Mallard duck -cg B D Turkey -cg B D American alligator cct B D X. tropicalis -ct B D Fugu cct Southern platyfish ccc Star-nosed mole --- Golden hamster --- B D Hedgehog --- B D Rat --- B D Shrew === B D Mouse --- Zebra mbuna === Pundamilia nyererei === Burton's mouthbreeder === Princess of Burundi === B D Nile tilapia === Mexican tetra (cavefish) === Spotted gar === B D Coelacanth === B D Zebrafish === B D Budgerigar === D Rock pigeon === B D Medaka === B D Tetraodon === D Chinese softshell turtle --- Yellowbelly pufferfish === B D Chicken === D Painted turtle --- B D Atlantic cod === B D Lizard === B D Stickleback === B D Guinea pig === B D Naked mole-rat --- Prairie vole --- Cape elephant shrew --- B D Chinese hamster --- B D Platypus === D Spiny softshell turtle --- D Green seaturtle --- David's myotis (bat) NNN B D Rabbit --- B D Pika --- B D Tenrec === Inserts between block 13 and 14 in window Chinchilla 9bp Brush-tailed rat 9bp B D Ferret 1bp B D Opossum 3bp B D Tasmanian devil 3bp B D Wallaby 3bp D Mallard duck 1bp B D Turkey 1bp B D X. tropicalis 1bp Alignment block 14 of 509 in window, 25161048 - 25161053, 6 bps B D Human -ggggga B D Chimp -ggggga B D Gorilla -ggggga B D Orangutan --gggga B D Gibbon -ggggga B D Rhesus -tgggga B D Crab-eating macaque -tgggga B D Baboon -tgagga B D Green monkey -tgggga B D Marmoset -cgggga B D Squirrel monkey -cgggga B D Bushbaby --ggaga Chinese tree shrew -cggggg B D Squirrel -ggagga Chinchilla -gcgggc Brush-tailed rat -ccggcc B D Pig --ggggt B D Alpaca --aggaa Bactrian camel --aggaa B D Dolphin --aggga Killer whale --aggga Tibetan antelope --gcgga B D Cow --gcgga B D Sheep --gcgga Domestic goat --gcgga B D Horse --gggga B D White rhinoceros --gggga B D Cat --gggaa B D Dog --gggaa B D Ferret -ggggga B D Panda --cggaa Pacific walrus --gggga Weddell seal --gggga Black flying-fox --gagga B D Megabat --gggga Big brown bat --ggtgg D Little brown bat --ggg-- B D Shrew ---gggg Star-nosed mole ---ggga B D Elephant -caggga Cape elephant shrew --ggggc B D Manatee -cgaaga Cape golden mole -cggaga Aardvark -caggca B D Armadillo -caggga D Rock pigeon --ggggg D Saker falcon --ggggc D Peregrine falcon --ggggc D Parrot --ggggt D Scarlet macaw --ggggt D Mallard duck ---gggc B D Turkey ---gggg B D American alligator -cgggga B D X. tropicalis -ggtgga B D Fugu ccgggg- Southern platyfish tcggag- Golden hamster ------- B D Hedgehog ------- B D Rat ------- B D Mouse ------- Zebra mbuna ======= Pundamilia nyererei ======= Burton's mouthbreeder ======= Princess of Burundi ======= B D Nile tilapia ======= Mexican tetra (cavefish) ======= Spotted gar ======= B D Coelacanth ======= B D Zebrafish ======= B D Budgerigar ======= B D Medaka ======= B D Tetraodon ======= D Chinese softshell turtle ------- Yellowbelly pufferfish ======= B D Chicken ======= D Painted turtle ------- B D Atlantic cod ======= B D Lizard ======= B D Stickleback ======= B D Guinea pig ======= B D Naked mole-rat ------- Prairie vole ------- B D Chinese hamster ------- B D Wallaby ======= B D Tasmanian devil ======= B D Platypus ======= D Spiny softshell turtle ------- D Green seaturtle ------- David's myotis (bat) NNNNNNN B D Rabbit ------- B D Opossum ======= B D Pika ------- Lesser Egyptian jerboa ------- B D Tenrec ======= Inserts between block 14 and 15 in window Big brown bat 8bp D Rock pigeon 6bp D Saker falcon 1bp D Peregrine falcon 1bp D Parrot 1bp D Scarlet macaw 1bp D Mallard duck 4bp B D Turkey 4bp B D American alligator 10bp Alignment block 15 of 509 in window, 25161054 - 25161064, 11 bps B D Human gg-gtagcc----ctg---- B D Chimp gg-gtagcc----ccg---- B D Gorilla gg-gtagcc----ccg---- B D Orangutan gc-gtagcc----ccg---- B D Gibbon gg-gtagcc----ccg---- B D Rhesus gg-gtagcc----cca---- B D Crab-eating macaque gg-gtagcc----cca---- B D Baboon gg-gtagcc----cca---- B D Green monkey gg-gtag-c----cca---- B D Marmoset ag-gaagct----ccg---- B D Squirrel monkey ag-gaagcc----ccg---- B D Bushbaby ga-gaagcc----cta---- Chinese tree shrew ggagaagac----ccc---- B D Squirrel ga-gaagcc----cct---- Lesser Egyptian jerboa ca-gaag-c----cg----- Prairie vole -a-gaagac----cc----- B D Chinese hamster -c-gaagac----cc----- Golden hamster -a-gaagac----cc----- B D Mouse -a-gaagac----cc----- B D Rat -a-gaagac----cc----- Chinchilla gg-gcaggcccgggc----- Brush-tailed rat gg-cgggat----gc----- B D Rabbit -------------gc----- B D Pika -------------gc----- B D Pig ga-gaggcg----cct---- B D Alpaca ga-gaagcc----cct---- Bactrian camel ga-gaagcc----cct---- B D Dolphin ga-gaag-c----cct---- Killer whale ga-gaag-c----cct---- Tibetan antelope ga-gaggcc----cct---- B D Cow ga-gaggcc----cct---- B D Sheep ga-gaggcc----cct---- Domestic goat ga-gaggcc----cct---- B D Horse ga-gcag-c----ccg---- B D White rhinoceros ga-gaagcc----cct---- B D Cat ga-gaagcc----tct---- B D Dog ga-gaagcc----tcc---- B D Ferret ga-gaagcc----tct---- B D Panda ga-gaagcc----tct---- Pacific walrus ca-gaagcc----tgg---- Weddell seal ga-gaagcc----tgg---- Black flying-fox gg-gaagcc----cct---- B D Megabat gg-gaagcc----cct---- Big brown bat gg-gaggcc----ccg---- D Little brown bat ga-gaggcc----c------ B D Shrew ga-ggggtg----ctg---- Star-nosed mole gg-gcgacc----ctg---- B D Elephant at-gcagcc----cca---- Cape elephant shrew gc-gcggcc----gct---- B D Manatee aa-gaagcc----cca---- Cape golden mole ga-gaagcc----ccc---- Aardvark gt-gcagcc----cca---- B D Armadillo ga-caagcc----cct---- B D Opossum ta-gagatc----cta---- B D Tasmanian devil ta--aaaac----cta---- B D Wallaby ta-gaaagc----cta---- D Rock pigeon -g-gacgcc----tct---- D Saker falcon -g-gaggcc----cct---- D Peregrine falcon -g-gaggcc----cct---- B D Budgerigar -g-gatgcc----cct---- D Parrot -g-gtcgcc----cct---- D Scarlet macaw -g-gatgcc----cct---- D Mallard duck -g-gtggct----gc----- B D Turkey -g-tgggct----gg----- B D American alligator gg-tcagcc----ccg---- D Green seaturtle ---gggtct----cct---- D Painted turtle ---gggtct----cct---- D Chinese softshell turtle ---gggtct----ccg---- D Spiny softshell turtle ---gggtct----ccg---- B D Lizard -g-ggcacc----cc----- B D X. tropicalis ----acgt------------ B D Fugu -----gctt----tcccacg Southern platyfish -----cgtc----tcat--- B D Hedgehog -------------------- Zebra mbuna ==================== Pundamilia nyererei ==================== Burton's mouthbreeder ==================== Princess of Burundi ==================== B D Nile tilapia ==================== Mexican tetra (cavefish) ==================== Spotted gar ==================== B D Coelacanth ==================== B D Zebrafish ==================== B D Medaka ==================== B D Tetraodon ==================== Yellowbelly pufferfish ==================== B D Chicken ==================== B D Atlantic cod ==================== B D Stickleback ==================== B D Guinea pig ==================== B D Naked mole-rat -------------------- B D Platypus ==================== David's myotis (bat) NNNNNNNNNNNNNNNNNNNN B D Tenrec ==================== Inserts between block 15 and 16 in window Bactrian camel 1bp B D Shrew 11bp D Rock pigeon 3bp D Saker falcon 3bp D Peregrine falcon 3bp B D Budgerigar 3bp D Parrot 3bp D Scarlet macaw 3bp D Mallard duck 3bp B D American alligator 1bp D Green seaturtle 4bp D Painted turtle 4bp D Chinese softshell turtle 4bp D Spiny softshell turtle 4bp B D Lizard 2bp B D X. tropicalis 2bp Alignment block 16 of 509 in window, 25161065 - 25161067, 3 bps B D Human -ggg B D Chimp -ggg B D Gorilla -ggg B D Orangutan -ggg B D Gibbon -ggg B D Rhesus -ggg B D Crab-eating macaque -ggg B D Baboon -ggg B D Green monkey -ggt B D Marmoset -ggg B D Squirrel monkey -ggg B D Bushbaby -gtg Chinese tree shrew -ggg B D Squirrel -gcg B D Pig -g-- B D Alpaca -g-- Bactrian camel -g-- B D Dolphin -g-- Killer whale -g-- Tibetan antelope -g-- B D Cow -g-- B D Sheep -g-- Domestic goat -g-- B D Horse -gg- B D White rhinoceros -cg- B D Cat -gg- B D Dog -gg- B D Ferret -gg- B D Panda -gg- Pacific walrus -gg- Weddell seal -gg- Black flying-fox -tg- B D Megabat -tg- Big brown bat -gg- D Little brown bat -gg- B D Shrew -gg- Star-nosed mole -gg- B D Armadillo -ggg B D Opossum -ggt B D Tasmanian devil -aga B D Wallaby -ggg D Rock pigeon -gc- D Saker falcon -gc- D Peregrine falcon -gc- B D Budgerigar -gc- D Parrot -gc- D Scarlet macaw -gc- D Mallard duck -gc- B D Chicken -gc- B D Turkey -gc- B D American alligator -gc- D Green seaturtle -ga- D Painted turtle -ga- D Chinese softshell turtle -ga- D Spiny softshell turtle -ga- B D Lizard -ac- B D X. tropicalis -g-- B D Fugu tgg- Southern platyfish tgg- Golden hamster ---- B D Hedgehog ---- B D Rat ---- B D Mouse ---- Zebra mbuna ==== Pundamilia nyererei ==== Burton's mouthbreeder ==== Princess of Burundi ==== B D Nile tilapia ==== Mexican tetra (cavefish) ==== Spotted gar ==== B D Coelacanth ==== B D Zebrafish ==== B D Medaka ==== B D Tetraodon ==== Yellowbelly pufferfish ==== B D Atlantic cod ==== B D Stickleback ==== B D Guinea pig ==== Brush-tailed rat ---- B D Naked mole-rat ---- Chinchilla ---- Prairie vole ---- Cape elephant shrew ---- B D Chinese hamster ---- B D Platypus ==== David's myotis (bat) NNNN B D Rabbit ---- B D Pika ---- Lesser Egyptian jerboa ---- B D Tenrec ==== Aardvark ---- B D Elephant ---- B D Manatee ---- Cape golden mole ---- Inserts between block 16 and 17 in window B D Opossum 11bp B D Tasmanian devil 11bp B D Wallaby 11bp D Rock pigeon 1bp D Saker falcon 1bp D Peregrine falcon 1bp B D Budgerigar 1bp D Parrot 1bp D Scarlet macaw 1bp D Mallard duck 8bp B D Chicken 2bp B D Turkey 8bp B D American alligator 1bp D Green seaturtle 38bp D Painted turtle 38bp D Chinese softshell turtle 29bp D Spiny softshell turtle 38bp Southern platyfish 5bp Alignment block 17 of 509 in window, 25161068 - 25161068, 1 bps B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Crab-eating macaque c B D Baboon c B D Green monkey c B D Marmoset t B D Squirrel monkey t B D Bushbaby c Chinese tree shrew t B D Squirrel c B D Cat c B D Dog c B D Ferret c B D Panda c Pacific walrus c Weddell seal c Black flying-fox c B D Megabat c Big brown bat c D Little brown bat c B D Armadillo g B D Opossum c B D Tasmanian devil c B D Wallaby c B D Fugu c B D Nile tilapia c Southern platyfish c Star-nosed mole - Golden hamster - B D Hedgehog - B D Rat - B D Shrew - B D Mouse - Zebra mbuna = Pundamilia nyererei = Burton's mouthbreeder = Princess of Burundi = D Peregrine falcon = D Saker falcon = Mexican tetra (cavefish) = Spotted gar = B D Coelacanth = B D Zebrafish = D Parrot = B D Budgerigar = D Rock pigeon = B D Medaka = D Mallard duck = B D Tetraodon = D Chinese softshell turtle = Yellowbelly pufferfish = B D Chicken = B D Turkey = B D X. tropicalis - D Painted turtle = B D Atlantic cod = B D American alligator = D Scarlet macaw = B D Lizard - B D Stickleback = B D Guinea pig = Brush-tailed rat - B D Naked mole-rat - Chinchilla - Prairie vole - Cape elephant shrew - B D Chinese hamster - Domestic goat - B D Sheep - B D Platypus = D Spiny softshell turtle = D Green seaturtle = B D Cow - Tibetan antelope - David's myotis (bat) N B D Pig - B D Rabbit - B D Pika - Bactrian camel - B D Alpaca - Lesser Egyptian jerboa - B D Tenrec = Aardvark - B D Elephant - B D Horse - B D White rhinoceros - B D Manatee - Killer whale - B D Dolphin - Cape golden mole - Inserts between block 17 and 18 in window B D Nile tilapia 21bp Alignment block 18 of 509 in window, 25161069 - 25161070, 2 bps B D Human cc B D Chimp cc B D Gorilla cc B D Orangutan cc B D Gibbon cc B D Rhesus cc B D Crab-eating macaque cc B D Baboon cc B D Green monkey cc B D Marmoset ct B D Squirrel monkey ct B D Bushbaby cc Chinese tree shrew cc B D Squirrel cc B D Pig cc B D Alpaca cc Bactrian camel cc B D Dolphin cc Killer whale cc Tibetan antelope cc B D Cow cc B D Sheep cc Domestic goat cc B D Horse cc B D White rhinoceros cc B D Cat cc B D Dog cc B D Ferret cc B D Panda cc Pacific walrus cc Weddell seal cc Black flying-fox cc B D Megabat cc Big brown bat cc D Little brown bat cc B D Hedgehog cc B D Shrew cc Star-nosed mole cc B D Armadillo cc B D Opossum ct B D Tasmanian devil cg B D Wallaby ct D Rock pigeon ct D Saker falcon ct D Peregrine falcon ct D Collared flycatcher ct B D Budgerigar ct D Parrot ct D Scarlet macaw ct D Mallard duck c- B D Chicken g- B D Turkey c- B D American alligator ct D Green seaturtle ct D Painted turtle ct D Chinese softshell turtle ct D Spiny softshell turtle ct B D Lizard cc B D Fugu cc B D Nile tilapia cc Princess of Burundi cc Burton's mouthbreeder cc Zebra mbuna cc Pundamilia nyererei cc Southern platyfish cc Golden hamster -- B D Rat -- B D Mouse -- Mexican tetra (cavefish) == Spotted gar == B D Coelacanth == B D Zebrafish == B D Medaka == B D Tetraodon == Yellowbelly pufferfish == B D X. tropicalis -- B D Atlantic cod == B D Stickleback == B D Guinea pig == Brush-tailed rat -- B D Naked mole-rat -- Chinchilla -- Prairie vole -- Cape elephant shrew -- B D Chinese hamster -- B D Platypus == David's myotis (bat) NN B D Rabbit -- B D Pika -- Lesser Egyptian jerboa -- B D Tenrec == Aardvark -- B D Elephant -- B D Manatee -- Cape golden mole -- Inserts between block 18 and 19 in window D Mallard duck 1bp B D Chicken 1bp B D Turkey 1bp Alignment block 19 of 509 in window, 25161071 - 25161077, 7 bps B D Human c----------------gct------gtg-------------- B D Chimp g----------------gct------gtg-------------- B D Gorilla c----------------tct------gtg-------------- B D Orangutan c----------------gct------gtg-------------- B D Gibbon c----------------gct------gtg-------------- B D Rhesus t----------------gat------gtg-------------- B D Crab-eating macaque t----------------gat------gtg-------------- B D Baboon c----------------gct------gtg-------------- B D Green monkey c----------------gct------gtg-------------- B D Marmoset c----------------gct------gcg-------------- B D Squirrel monkey c----------------gct------gcg-------------- B D Bushbaby c----------------tct------tag-------------- Chinese tree shrew t----------------gcg------gcg-------------- B D Squirrel c----------------gct------gca-------------- Lesser Egyptian jerboa ------------------cg------gcg-------------- Prairie vole ------------------ct------gca-------------- B D Chinese hamster ------------------ct------gcg-------------- Golden hamster ------------------ct------gcg-------------- B D Mouse ------------------ct------gca-------------- B D Rat ------------------ct------gca-------------- B D Naked mole-rat ---------------------------cg-------------- Chinchilla ------------------cc------gcg-------------- Brush-tailed rat ------------------cc------tcg-------------- B D Pig c----------------cct------gaa-------------- B D Alpaca c----------------gcg------gcg-------------- Bactrian camel c----------------gcg------gcg-------------- B D Dolphin c----------------act------gcg-------------- Killer whale c----------------act------gcg-------------- Tibetan antelope g----------------gct------gcg-------------- B D Cow c----------------gct------gcg-------------- B D Sheep c----------------gct------gcg-------------- Domestic goat c----------------gct------gcg-------------- B D Horse c----------------gcc------gcg-------------- B D White rhinoceros c----------------gct------gcg-------------- B D Cat c----------------gct------gca-------------- B D Dog c----------------gct------gcg-------------- B D Ferret c----------------gcg------gcg-------------- B D Panda c----------------gct------g-g-------------- Pacific walrus c----------------gcg------gcg-------------- Weddell seal c----------------gcg------gcg-------------- Black flying-fox c----------------tcg------gtg-------------- B D Megabat c----------------tcg------gtg-------------- Big brown bat c----------------gcg------gcg-------------- D Little brown bat c----------------gcg------gcg-------------- B D Hedgehog c----------------ggg----------------------- B D Shrew c----------------ggtgggggggcg-------------- Star-nosed mole c----------------gct------gca-------------- B D Elephant ------------------ct------gcg-------------- Cape elephant shrew ------------------tc------g---------------- B D Manatee ------------------ct------gcg-------------- Cape golden mole ------------------ct------gcg-------------- Aardvark ------------------ct------gta-------------- B D Armadillo c----------------gcc------gcg-------------- B D Opossum a----------------gct------ctt-------------- B D Tasmanian devil a----------------ggt------ttt-------------- B D Wallaby a----------------gct------ttt-------------- D Rock pigeon ccccc-------------------------------------- D Saker falcon c------------------------------------------ D Peregrine falcon c------------------------------------------ D Collared flycatcher c------------------------------------------ B D Budgerigar c------------------------------------------ D Parrot c------------------------------------------ D Scarlet macaw c------------------------------------------ B D American alligator c----cccagc-------------------------------- D Green seaturtle c------------------------------------------ D Painted turtle c------------------------------------------ D Chinese softshell turtle c------------------------------------------ D Spiny softshell turtle c------------------------------------------ B D Lizard c----------ttcccg-------------------------- B D X. tropicalis -----------------------ctcgta-------------- B D Nile tilapia ---------------------------cattat---------t Princess of Burundi ---------------------------cattat---------t Burton's mouthbreeder ---------------------------cattat---------t Zebra mbuna ---------------------------cattat---------t Pundamilia nyererei ---------------------------cattat---------t Southern platyfish ---------------------------cggcgtgtcggagcgt Mexican tetra (cavefish) =========================================== Spotted gar =========================================== B D Coelacanth =========================================== B D Zebrafish =========================================== B D Medaka =========================================== D Mallard duck =========================================== B D Tetraodon =========================================== Yellowbelly pufferfish =========================================== B D Fugu =========================================== B D Chicken =========================================== B D Turkey =========================================== B D Atlantic cod =========================================== B D Stickleback =========================================== B D Guinea pig =========================================== B D Platypus =========================================== David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Rabbit ------------------------------------------- B D Pika ------------------------------------------- B D Tenrec =========================================== Inserts between block 19 and 20 in window B D Armadillo 1bp D Saker falcon 2bp D Peregrine falcon 2bp B D Budgerigar 2bp D Parrot 2bp D Scarlet macaw 2bp B D American alligator 2bp B D X. tropicalis 3bp Alignment block 20 of 509 in window, 25161078 - 25161078, 1 bps B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Crab-eating macaque c B D Baboon c B D Green monkey c B D Marmoset c B D Squirrel monkey c B D Bushbaby t Chinese tree shrew c B D Squirrel c Prairie vole c B D Chinese hamster c Golden hamster c B D Mouse c B D Rat c B D Pig c B D Alpaca c Bactrian camel c B D Dolphin c Killer whale c Tibetan antelope c B D Cow c B D Sheep c Domestic goat c B D Horse c B D White rhinoceros c B D Dog c B D Ferret c B D Panda c Pacific walrus c Weddell seal c Black flying-fox c B D Megabat c Big brown bat c D Little brown bat c B D Elephant c B D Manatee c Cape golden mole t Aardvark c B D Armadillo c B D Opossum c B D Tasmanian devil c B D Wallaby c D Rock pigeon c D Saker falcon c D Peregrine falcon c D Collared flycatcher c B D Zebra finch c B D Budgerigar c D Parrot c D Scarlet macaw c D Mallard duck c B D Chicken c B D Turkey c B D American alligator c B D Lizard c B D X. tropicalis a B D Zebrafish c Star-nosed mole - B D Hedgehog - B D Shrew - Zebra mbuna - Pundamilia nyererei - Burton's mouthbreeder - Princess of Burundi - B D Nile tilapia - Mexican tetra (cavefish) = Spotted gar = B D Coelacanth = Southern platyfish - B D Medaka = B D Tetraodon = D Chinese softshell turtle - Yellowbelly pufferfish = B D Fugu = D Painted turtle - B D Atlantic cod = B D Stickleback = B D Guinea pig = Brush-tailed rat - B D Naked mole-rat - Chinchilla - Cape elephant shrew - B D Platypus = D Spiny softshell turtle - D Green seaturtle - David's myotis (bat) N B D Rabbit - B D Pika - Lesser Egyptian jerboa - B D Tenrec = B D Cat - Alignment block 21 of 509 in window, 25161079 - 25161083, 5 bps B D Human cc---tca B D Chimp cc---tca B D Gorilla cc---tca B D Orangutan cc---tca B D Gibbon cc---tca B D Rhesus cc---tca B D Crab-eating macaque cc---tca B D Baboon cc---tca B D Green monkey cc---tca B D Marmoset ct---tca B D Squirrel monkey ct---tca B D Bushbaby cc---tca Chinese tree shrew c----tca B D Squirrel cc---tca Lesser Egyptian jerboa -c---tca Prairie vole cc---tca B D Chinese hamster cc---tca Golden hamster cc---tca B D Mouse cc---tca B D Rat cc---tca B D Naked mole-rat cc---tca Chinchilla cc---tca Brush-tailed rat cc---tca B D Rabbit gc---tca B D Pika gc---tca B D Pig cc---tca B D Alpaca cc---tca Bactrian camel cc---tca B D Dolphin cc---tca Killer whale cc---tca Tibetan antelope cc---tca B D Cow cc---tca B D Sheep cc---tca Domestic goat cc---tca B D Horse cc---tca B D White rhinoceros cc---tca B D Cat cg---tca B D Dog cc---tca B D Ferret cc---tca B D Panda cc---tca Pacific walrus cc---tca Weddell seal cc---tca Black flying-fox cc---tca B D Megabat cc---tca Big brown bat cc---tca D Little brown bat cc---tca B D Hedgehog -c---tca B D Shrew cc---tca Star-nosed mole cc---cta B D Elephant cc---tca Cape elephant shrew -c---tca B D Manatee cc---tca Cape golden mole cc---tca Aardvark cc---tca B D Armadillo cc---tca B D Opossum cc---tca B D Tasmanian devil cc---tca B D Wallaby cc---tca D Rock pigeon ca---tca D Saker falcon ca---tca D Peregrine falcon ca---tca D Collared flycatcher ca---tca B D Zebra finch cg---tca B D Budgerigar ca---tca D Parrot ca---tca D Scarlet macaw ca---tca D Mallard duck cggccccg B D Chicken tg--ctca B D Turkey cg--ctca B D American alligator ct---tta D Green seaturtle --acctta D Painted turtle --acctta D Chinese softshell turtle --ccctta D Spiny softshell turtle --ccctta B D Lizard aa---tta B D X. tropicalis cc---cta B D Nile tilapia -c---tct Princess of Burundi -c---tct Burton's mouthbreeder -c---tct Zebra mbuna -c---tct Pundamilia nyererei -c---tct Southern platyfish -c---tca B D Atlantic cod -c---cca B D Zebrafish ac---tca Mexican tetra (cavefish) cc---tca Spotted gar cc---tta B D Coelacanth ======== B D Medaka ======== B D Tetraodon ======== Yellowbelly pufferfish ======== B D Fugu ======== B D Stickleback ======== B D Guinea pig ======== B D Platypus ======== David's myotis (bat) NNNNNNNN B D Tenrec ======== Inserts between block 21 and 22 in window B D Nile tilapia 1bp Princess of Burundi 1bp Burton's mouthbreeder 1bp Zebra mbuna 1bp Pundamilia nyererei 1bp Southern platyfish 337bp B D Atlantic cod 2bp Alignment block 22 of 509 in window, 25161084 - 25161089, 6 bps B D Human ctcgcc B D Chimp ctcgcc B D Gorilla ctcgcc B D Orangutan ctcgcc B D Gibbon ctcgcc B D Rhesus ctggcc B D Crab-eating macaque ctggcc B D Baboon ctggcc B D Green monkey ctggcc B D Marmoset ctggcc B D Squirrel monkey ctggcc B D Bushbaby ctggcc Chinese tree shrew ctggcc B D Squirrel ctggcc Lesser Egyptian jerboa ctggcc Prairie vole ctggcc B D Chinese hamster ctggcc Golden hamster ctggcc B D Mouse ctggcc B D Rat ctggcc B D Naked mole-rat ctggcc Chinchilla ctggcc Brush-tailed rat ctggcc B D Rabbit cgggcc B D Pika cgggcc B D Pig ctggcc B D Alpaca ctggcc Bactrian camel ctggcc B D Dolphin ctggcc Killer whale ctggcc Tibetan antelope ctggcc B D Cow ctggcc B D Sheep ctggcc Domestic goat ctggcc B D Horse ctggcc B D White rhinoceros ctggcc B D Cat ctggcc B D Dog ctggcc B D Ferret ctggcc B D Panda ctggcc Pacific walrus ctggcc Weddell seal ctggcc Black flying-fox ctggcc B D Megabat ctggcc Big brown bat ctggcc D Little brown bat ctggcc B D Hedgehog ctggcc B D Shrew ctggcc Star-nosed mole ctggcc B D Elephant gtggcc Cape elephant shrew ctggcc B D Manatee ctggcc Cape golden mole ctggcc Aardvark ctggcc B D Armadillo ctggcc B D Opossum ctgccc B D Tasmanian devil ctggcc B D Wallaby ttctcc D Rock pigeon ctgccc D Saker falcon ctgccc D Peregrine falcon ctgccc D Collared flycatcher ctgccc B D Zebra finch ctgccc B D Budgerigar ctgccc D Parrot ctgccc D Scarlet macaw ctgccc D Mallard duck ctgggt B D Chicken ctgacc B D Turkey ctgagc B D American alligator ttggcc D Green seaturtle ctggcc D Painted turtle ctggcc D Chinese softshell turtle ctggcc D Spiny softshell turtle ctggcc B D Lizard ttggcc B D X. tropicalis ctgacc B D Fugu ctcacc Yellowbelly pufferfish ctcacc B D Nile tilapia cacatc Princess of Burundi cacatc Burton's mouthbreeder cacatc Zebra mbuna cacatc Pundamilia nyererei cacatc Southern platyfish cacatc B D Atlantic cod ctcccc B D Zebrafish ctcatc Mexican tetra (cavefish) gtggtc Spotted gar ctggcc B D Coelacanth ====== B D Medaka ====== B D Tetraodon ====== B D Stickleback ====== B D Guinea pig ====== B D Platypus ====== David's myotis (bat) NNNNNN B D Tenrec ====== Alignment block 23 of 509 in window, 25161090 - 25161091, 2 bps B D Human ct B D Chimp ct B D Gorilla ct B D Orangutan ct B D Gibbon ct B D Rhesus ct B D Crab-eating macaque ct B D Baboon ct B D Green monkey ct B D Marmoset ct B D Squirrel monkey ct B D Bushbaby ct Chinese tree shrew ct B D Squirrel ct Lesser Egyptian jerboa ct Prairie vole ct B D Chinese hamster ct Golden hamster ct B D Mouse ct B D Rat ct B D Naked mole-rat ct Chinchilla ct Brush-tailed rat ct B D Rabbit ct B D Pika ct B D Pig ct B D Alpaca ct Bactrian camel ct B D Dolphin ct Killer whale ct Tibetan antelope ct B D Cow ct B D Sheep ct Domestic goat ct B D Horse ct B D White rhinoceros ct B D Cat ct B D Dog ct B D Ferret ct B D Panda ct Pacific walrus ct Weddell seal ct Black flying-fox ct B D Megabat ct Big brown bat at D Little brown bat ct B D Hedgehog ct B D Shrew ct Star-nosed mole ct B D Elephant ct Cape elephant shrew ct B D Manatee ct Cape golden mole ct Aardvark ct B D Armadillo ct B D Opossum ct B D Tasmanian devil ct B D Wallaby gt D Rock pigeon ct D Saker falcon ct D Peregrine falcon ct D Collared flycatcher at B D Zebra finch at B D Budgerigar ct D Parrot ct D Scarlet macaw ct D Mallard duck tt B D Chicken ct B D Turkey ct B D American alligator ct D Green seaturtle tt D Painted turtle tt D Chinese softshell turtle ct D Spiny softshell turtle ct B D Lizard tt B D X. tropicalis ct B D Coelacanth ct B D Fugu ct Yellowbelly pufferfish ct B D Nile tilapia tt Princess of Burundi tt Burton's mouthbreeder tt Zebra mbuna tt Pundamilia nyererei tt Southern platyfish ct B D Atlantic cod t- B D Zebrafish ct Mexican tetra (cavefish) ct Spotted gar tt B D Medaka == B D Tetraodon == B D Stickleback == B D Guinea pig == B D Platypus == David's myotis (bat) NN B D Tenrec == Inserts between block 23 and 24 in window B D Nile tilapia 4bp Alignment block 24 of 509 in window, 25161092 - 25161098, 7 bps B D Human tcttgta B D Chimp tcttgta B D Gorilla tcttgta B D Orangutan tcttgta B D Gibbon tcttgta B D Rhesus tcttgta B D Crab-eating macaque tcttgta B D Baboon tcttgta B D Green monkey tcttgta B D Marmoset tcttgta B D Squirrel monkey tcttgta B D Bushbaby tcttgtg Chinese tree shrew ttttgtg B D Squirrel tcttgtg Lesser Egyptian jerboa tcttgtg Prairie vole tcttgtg B D Chinese hamster tcttgtg Golden hamster tcttgtg B D Mouse tcttgtg B D Rat tcttgtg B D Naked mole-rat tctggtg Chinchilla tcttgtg Brush-tailed rat tcttgtg B D Rabbit tcttgtg B D Pika tcctgtg B D Pig tcttgtg B D Alpaca tcttgtg Bactrian camel tcttgtg B D Dolphin tcttgtg Killer whale tcttgtg Tibetan antelope tcttgtg B D Cow tcttgtg B D Sheep tcttgtg Domestic goat tcttgtg B D Horse tcttgtg B D White rhinoceros tcttgtg B D Cat tcttgtg B D Dog tcttgtg B D Ferret tcttgtg B D Panda tcttgtg Pacific walrus tcttgtg Weddell seal tcttgtg Black flying-fox tcttgtg B D Megabat tcttgtg Big brown bat tctggtt D Little brown bat tccggtg B D Hedgehog tcttgta B D Shrew tcttgtg Star-nosed mole tcttgtg B D Elephant tcttgta Cape elephant shrew tcttgtg B D Manatee tcttgtg Cape golden mole tcttgtg Aardvark tcttgtg B D Armadillo tcttgtg B D Opossum tcttgtg B D Tasmanian devil tgtcagg B D Wallaby tctcgtg D Rock pigeon tcttgta D Saker falcon tcttgta D Peregrine falcon tcttgta D Collared flycatcher ccttgga B D Zebra finch ccttggc B D Budgerigar tcttgta D Parrot tcttgta D Scarlet macaw tcttgta D Mallard duck tggggtg B D Chicken tcttgta B D Turkey tcttgta B D American alligator tcttgta D Green seaturtle tcttgta D Painted turtle tcttgta D Chinese softshell turtle tcttgta D Spiny softshell turtle tcttgta B D Lizard tcttgta B D X. tropicalis ttttgtg B D Coelacanth tttcatg B D Fugu -----t- Yellowbelly pufferfish -----t- B D Nile tilapia -----ta Princess of Burundi -----ta Burton's mouthbreeder -----ta Zebra mbuna -----ta Pundamilia nyererei -----ta Southern platyfish -----tc B D Stickleback tcctctg B D Atlantic cod ---tcta B D Zebrafish tcctcgg Mexican tetra (cavefish) tcttctg Spotted gar ttttctg B D Medaka ======= B D Tetraodon ======= B D Guinea pig ======= B D Platypus ======= David's myotis (bat) NNNNNNN B D Tenrec ======= Inserts between block 24 and 25 in window B D Nile tilapia 1bp Princess of Burundi 1bp Burton's mouthbreeder 1bp Zebra mbuna 1bp Pundamilia nyererei 1bp Southern platyfish 5bp B D Stickleback 1bp B D Atlantic cod 6bp Spotted gar 3bp Alignment block 25 of 509 in window, 25161099 - 25161100, 2 bps B D Human gg B D Chimp gg B D Gorilla gg B D Orangutan gg B D Gibbon gg B D Rhesus gg B D Crab-eating macaque gg B D Baboon gg B D Green monkey gg B D Marmoset gg B D Squirrel monkey gg B D Bushbaby cg Chinese tree shrew gg B D Squirrel cg Lesser Egyptian jerboa gg Prairie vole ag B D Chinese hamster ag Golden hamster cg B D Mouse cg B D Rat cg B D Naked mole-rat gg Chinchilla gg Brush-tailed rat gg B D Rabbit cg B D Pika cg B D Pig gg B D Alpaca gg Bactrian camel gg B D Dolphin gg Killer whale gg Tibetan antelope gg B D Cow gg B D Sheep gg Domestic goat gg B D Horse gg B D White rhinoceros gg B D Cat gg B D Dog gg B D Ferret gg B D Panda tg Pacific walrus gg Weddell seal gg Black flying-fox gg B D Megabat gg Big brown bat gg D Little brown bat gg B D Hedgehog ag B D Shrew cg Star-nosed mole gg B D Elephant gg Cape elephant shrew cg B D Manatee gg Cape golden mole gg Aardvark gg B D Armadillo gg B D Opossum gc B D Tasmanian devil gg B D Wallaby gg D Rock pigeon gg D Saker falcon gg D Peregrine falcon gg D Collared flycatcher aa B D Zebra finch aa B D Budgerigar gg D Parrot gg D Scarlet macaw gg D Mallard duck gg B D Chicken gg B D Turkey gg B D American alligator gg D Green seaturtle gg D Painted turtle gg D Chinese softshell turtle gg D Spiny softshell turtle gg B D Lizard cg B D X. tropicalis gg B D Coelacanth ac B D Tetraodon -g B D Fugu -g Yellowbelly pufferfish -g Southern platyfish -a B D Stickleback -a B D Atlantic cod -g B D Zebrafish -t Mexican tetra (cavefish) -g Spotted gar -g Zebra mbuna == Pundamilia nyererei == Burton's mouthbreeder == Princess of Burundi == B D Nile tilapia == B D Medaka == B D Guinea pig == B D Platypus == David's myotis (bat) NN B D Tenrec == Inserts between block 25 and 26 in window B D Tetraodon 1bp B D Fugu 1bp Yellowbelly pufferfish 1bp Southern platyfish 1bp B D Zebrafish 2bp Mexican tetra (cavefish) 4bp Spotted gar 1bp Alignment block 26 of 509 in window, 25161101 - 25161101, 1 bps B D Human c B D Chimp c B D Gorilla c B D Orangutan c B D Gibbon c B D Rhesus c B D Crab-eating macaque c B D Baboon c B D Green monkey c B D Marmoset c B D Squirrel monkey c B D Bushbaby c Chinese tree shrew c B D Squirrel c Lesser Egyptian jerboa c Prairie vole c B D Chinese hamster c Golden hamster c B D Mouse c B D Rat c B D Naked mole-rat c Chinchilla c Brush-tailed rat c B D Rabbit c B D Pika c B D Pig c B D Alpaca c Bactrian camel c B D Dolphin c Killer whale c Tibetan antelope c B D Cow c B D Sheep c Domestic goat c B D Horse c B D White rhinoceros c B D Cat c B D Dog c B D Ferret c B D Panda c Pacific walrus c Weddell seal c Black flying-fox c B D Megabat c Big brown bat c D Little brown bat c B D Hedgehog c B D Shrew c Star-nosed mole c B D Elephant c Cape elephant shrew c B D Manatee c Cape golden mole c Aardvark c B D Armadillo c B D Opossum c B D Tasmanian devil c B D Wallaby c D Rock pigeon c D Saker falcon t D Peregrine falcon t D Collared flycatcher a B D Zebra finch a B D Budgerigar c D Parrot c D Scarlet macaw c D Mallard duck a B D Chicken c B D Turkey c B D American alligator c D Green seaturtle c D Painted turtle c D Chinese softshell turtle c D Spiny softshell turtle c B D Lizard g B D X. tropicalis t B D Coelacanth c B D Tetraodon c B D Fugu c Yellowbelly pufferfish c B D Medaka c B D Stickleback c Mexican tetra (cavefish) c Spotted gar c Zebra mbuna = Pundamilia nyererei = Burton's mouthbreeder = Princess of Burundi = B D Nile tilapia = B D Zebrafish = Southern platyfish = B D Atlantic cod - B D Guinea pig = B D Platypus = David's myotis (bat) N B D Tenrec = Alignment block 27 of 509 in window, 25161102 - 25161128, 27 bps B D Human gttcttgatgatggcgtttttgaacag B D Chimp gttcttgatgatggcgtttttgaacag B D Gorilla gttcttgatgatggcgtttttgaacag B D Orangutan gttcttgatgatggcgtttttgaacag B D Gibbon gttcttgatgatggcgtttttgaacag B D Rhesus gttcttgatgatggcgtttttgaacag B D Crab-eating macaque gttcttgatgatggcgtttttgaacag B D Baboon gttcttgatgatggcgtttttgaacag B D Green monkey gttcttgatgatggcgtttttgaacag B D Marmoset gttcttgataatggcgtttttgaacag B D Squirrel monkey gttcttgataatggcgtttttgaacag B D Bushbaby gctcttgacaatggcgtttttgaagag Chinese tree shrew gttcttgatgatggcatttctgaacag B D Squirrel gttcttgatgatggcgttcttgaacag Lesser Egyptian jerboa attcttgatgatggcgttcttgaacag Prairie vole gttcttgacgatggcgttcttaaagag B D Chinese hamster gttcttgacgatggcgttcttaaagag Golden hamster gttcttgacgatggcattcttaaagag B D Mouse gttcttgatgatggcgttcttgaagag B D Rat gttcttgatgatggcgttcttgaagag B D Naked mole-rat gttcttgatgatggcgttcttgaacag B D Guinea pig gttcttgacgatgacgttc-tgaacag Chinchilla gttcttgatgatggcgttcttgaacag Brush-tailed rat gttcttgatgatggcgttcttgaacag B D Rabbit gttcttgacgatggcgttgcggaacag B D Pika gcccttgacgatggcgttcctgaagag B D Pig gttcttgacgatggcgtttttgaacag B D Alpaca gttcttcatgatggcatttttgaacag Bactrian camel gttcttgatgatggcgtttttgaacag B D Dolphin gttcttgatgatggtgtttttgaacag Killer whale gttcttgatgatggtgtttttgaacag Tibetan antelope gttcttgatgatggcgtttctgaacag B D Cow gttcttgatgatggcgtttttgaacag B D Sheep gttcttgatgatggcgtttttgaacag Domestic goat gttcttgatgatggcgtttttgaacag B D Horse gttcttgatgatggc-gttttgaacag B D White rhinoceros gttcttgatggcg---tttttgaacag B D Cat gttcttgatgatggcgtttttgaacag B D Dog gttcttgatgatggcgtttttgaacag B D Ferret gttcttgatgatggcgtttttgaacag B D Panda gttcttgatgatggcgtttttgaacag Pacific walrus gttcttgatgatggcgtttttgaacag Weddell seal gttcttgatgatggcgtttttgaagag Black flying-fox gttcttgatgatggcgtttttgaacag B D Megabat gttcttgatgatggcgtttttgaacag Big brown bat gttcttgatgatggcgtttttgaacag D Little brown bat gttcttgatgatggcgtttttgaacag B D Hedgehog gctcttgatgatggcgtttctgaacag B D Shrew gttcttgatgatggcgttcctgaacag Star-nosed mole gttcttgatgatggcatttttgaacag B D Elephant gttcttgatgatggcgtttttgaacag Cape elephant shrew gttcttgatgatggcgtttttgaacag B D Manatee gttcttgatgatggcgtttttgaacag Cape golden mole gttcttgatgatggcgtttctgaacag Aardvark gttcttgatgatggcgtttttgaaaag B D Armadillo ggtcttgatgatggcgtttctgaacag B D Opossum attcttgatgatggcatttttgaagag B D Tasmanian devil attcttgattatggcatttctgaacag B D Wallaby atacttg---atggcatttttgaacag D Rock pigeon gcttttgacgatggcgtttttgaagag D Saker falcon gcttttgatgatggcatttttgaagag D Peregrine falcon gcttttgatgatggcatttttgaagag D Collared flycatcher gcttttcccgatggcgttcttgaagag B D Zebra finch actcttcccgatggcgttcttgaagag B D Budgerigar gctcttgatgatggcgtttttgaagag D Parrot gctcttgatgatggtgtttttgaagag D Scarlet macaw gctcttgatgatggtgtttttgaagag D Mallard duck g-----gacgaggg----------caa B D Chicken gcttttgacgatggcgtttttgaacag B D Turkey gcttttgacgatggcgtttttgaacag B D American alligator gcttttgacgatggcgttcttaaaaag D Green seaturtle atttttgattatggcattcttaaaaag D Painted turtle atttttgattatggcattcttaaaaag D Chinese softshell turtle atttttgattatggcattcttaaagag D Spiny softshell turtle atttttgattatggcattcttaaaaag B D Lizard cgtcttgacaatggcgttcttgaaaag B D X. tropicalis gtttttgatgatggcatttttgaaaag B D Coelacanth atccttgatcatgacattcttaaagag B D Tetraodon tttcttgtctattatggtcctgaagag B D Fugu gttcttgtctataatgttcctgaagat Yellowbelly pufferfish gttcttgtctataatgttcctgaagat B D Nile tilapia ------------aatgttcctgaagaa Princess of Burundi ------------aatgttcctgaagaa Burton's mouthbreeder ------------aatgttcctgaagaa Zebra mbuna ------------aatgttcctgaagaa Pundamilia nyererei ------------aatgttcctgaagaa B D Medaka gtccttgttgatgatgttcttgaagag Southern platyfish --------------tgttcttgaataa B D Stickleback gtccttgaggaaaatgttcctgagcag B D Atlantic cod ----cgtttgaaggtgctcccgaagaa B D Zebrafish gtctttatgcattacgtttttgaagag Mexican tetra (cavefish) gtctttgttgatgacgtttttgaagag Spotted gar gtccttaatgatgacgttcttaaagag B D Platypus =========================== David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec =========================== Alignment block 28 of 509 in window, 25161129 - 25161156, 28 bps B D Human cgtcaccaggggcgtctggctcttctcg------ B D Chimp cgtcaccaggggcgtctggctcttctcg------ B D Gorilla cgtcaccaggggcgtctggctcttctcg------ B D Orangutan cgtcaccaggggcgtctggcttttctcg------ B D Gibbon cgtcaccaggggcgtctgactcttctcg------ B D Rhesus tgtcaccaggggagtctggctcttctcg------ B D Crab-eating macaque tgtcaccaggggagtctggctcttctcg------ B D Baboon tgtcaccaggggagtctggctcttctcg------ B D Green monkey tgtcaccaggggagtctggctcttctcg------ B D Marmoset cgtcaccaggggcgtctggctcttctcg------ B D Squirrel monkey cgtcaccaggggcgtctggctcttctcg------ B D Bushbaby cgtcaccaggggcgtctggctcttctcc------ Chinese tree shrew cgtcaccaggggcgtctggctcttctcg------ B D Squirrel cgtcaccaggggcgtctggctcttctca------ Lesser Egyptian jerboa cgtcaccagcggcgtctggctcttctcc------ Prairie vole tgtcactaggggcgtctggctcttctcg------ B D Chinese hamster tgtcaccaggggcgtctggctcttctcg------ Golden hamster tgtcaccaggggcgtctggctcttctcg------ B D Mouse cgtcaccaggggcgtctggctcttctcg------ B D Rat cgtcaccaggggcgtctggctcttctcg------ B D Naked mole-rat cgtcaccagcggcgtctggcccttctcc------ B D Guinea pig cgtcaccagcggcgtctggctcttctcc------ Chinchilla cgtcaccagcggcgtctggctcttctcc------ Brush-tailed rat cgtcaccagcggcgtctggctcttctcc------ B D Rabbit cgtcaccagcggcgtctggcccttctcc------ B D Pika cgtcaccagcggcgtctgacccttgtcg------ B D Pig cgtgaccaggggcgtctggctcttctcg------ B D Alpaca ggtcaccaggggcgtctggctcttctcc------ Bactrian camel ggtcaccaggggcgtctggctcttctcc------ B D Dolphin cgtgaccaggggcgtctggctcttctcg------ Killer whale cgtgaccaggggcgtctggctcttctcg------ Tibetan antelope cgtgacaaggggcgtttggctcttctcc------ B D Cow cgtgacaaggggcgtttggctcttctcg------ B D Sheep cgtgacaaggggcgtttggct------------- Domestic goat cgtgacaaggggcgtttggctcttctcc------ B D Horse cgtcacca-gggcgtctggctcttctc------- B D White rhinoceros cgtcaccaggggcgtctggctcttctcg------ B D Cat cgtcaccagaggcgtctggctcttctcc------ B D Dog cgtcaccaggggcgtctggctcctctcc------ B D Ferret cgtcaccaagggggtctggctcttctcg------ B D Panda cgtcaccaggggcgtctggctcttctcg------ Pacific walrus cgtcaccaggggggtctggctcttctcg------ Weddell seal cgtcaccaggggggtctggctcttctcg------ Black flying-fox cgtcaccaggggcgtctggctcttctcg------ B D Megabat cgtcaccaggggcgtctggctcttctcg------ Big brown bat cgtcaccaggggcgtctggctcttctcc------ D Little brown bat cgtcaccaggggcgtctggctcttctcc------ B D Hedgehog cgtcaccagcggcgtctggctcttctcg------ B D Shrew cgtcaccaggggcgtctggctcttctcg------ Star-nosed mole cgtcacgagtggcgtctggctcttctcc------ B D Elephant cgtcaccaggggcgtctggcttttctcg------ Cape elephant shrew cgtcaccagcggcgtctggcctttgtcg------ B D Manatee cgtcacgagaggggtctggcttttctca------ Cape golden mole cgtcaccaggggcgtctggcttttctcc------ Aardvark cgtcaccaggggcgtctggcttttctca------ B D Armadillo ggtcaccagaggcgtctggcccttctcg------ B D Opossum tgtcatgagaggggtatggctcttctca------ B D Tasmanian devil tgtcatgagaggagtatgactcttctca------ B D Wallaby tgtcatgagaggggtatgactcttctca------ B D Platypus cgtgacgagcggcatgggccccctctcc------ D Rock pigeon agtcactagcggggtctggccgtgctcc------ D Saker falcon agtcactagaggggtctggctgtgctcc------ D Peregrine falcon agtcactagaggggtctggctgtgctcc------ D Collared flycatcher cgtcaccagcggcgtccggatcctctcc------ B D Zebra finch cgtcaccaacggcgtccggatcctctcg------ B D Budgerigar agtcactagaggggtctggctgtgctcc------ D Parrot agtcactagaggggtctggctgtgctcc------ D Scarlet macaw agtcactagaggggtctggctgtgctcc------ D Mallard duck atccttcacctggggtggg--------------- B D Chicken agtcatcagcggggtctggctgtgctcc------ B D Turkey agtcatcagcggggtctggctgtgctcc------ B D American alligator agtcactagaggcgtctggctgtgctct------ D Green seaturtle agtcattaaaggggtctggctgttctcc------ D Painted turtle agtcattaaaggggtctggctgttctcc------ D Chinese softshell turtle agtcattagaggggtctggctgctctct------ D Spiny softshell turtle agtcattagaggggtctggctgctctcc------ B D Lizard agtcactaagggcatgcggctgcgctcg------ B D X. tropicalis agtcattagaggtgtctggctccgctca------ B D Coelacanth agtcattaagggcttctggctcctctcg------ B D Tetraodon cttggccagctgtctcaga------------cgg B D Fugu cttgcccatctgtgtcaga------------cgg Yellowbelly pufferfish c--nnnnnnntgtgtcaga------------cgg B D Nile tilapia cttggccagctgcccctgaggtttctcctcccac Princess of Burundi cttggccagctgcccctgaggtttctcctcccac Burton's mouthbreeder cttggccagctgcccctgaggtttctcctcccac Zebra mbuna cttggccagctgcccctgaggtttctcctcccac Pundamilia nyererei cttggccagctgcccctgaggtttctcctcccac B D Medaka cgtcaccagtggtttctggcgatcctcctcccag Southern platyfish cttggacagcttttcccgaggtttctcctcccac B D Stickleback cttgtccagctgacctttaggtttcttcctcggc B D Atlantic cod cctggacaggggcttc------ttcacctcccac B D Zebrafish tgtgagcagtggtttctgagcacgctcgtcccag Mexican tetra (cavefish) cgtcagcagaggtttctggctccgttcatcccag Spotted gar cgtcaggagtggcttctggctgcgctcgtcccag David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec ================================== Inserts between block 28 and 29 in window B D Coelacanth 6bp Alignment block 29 of 509 in window, 25161157 - 25161167, 11 bps B D Human gaggtcatgaa B D Chimp gaggtcatgaa B D Gorilla gaggtcatgaa B D Orangutan gaggtcatgaa B D Gibbon gaggtcatgaa B D Rhesus gaggtcatgaa B D Crab-eating macaque gaggtcatgaa B D Baboon gaggtcatgaa B D Green monkey gaggtcatgaa B D Marmoset gaggtcatgaa B D Squirrel monkey gaggtcatgaa B D Bushbaby gaggtcatgaa Chinese tree shrew gacgtcatgaa B D Squirrel gaggtcatgaa Lesser Egyptian jerboa gagctcatgaa Prairie vole gaggtcatgaa B D Chinese hamster gaggtcatgaa Golden hamster gaggtcatgaa B D Mouse gaggtcatgaa B D Rat gaggtcatgaa B D Naked mole-rat gagctcatgaa B D Guinea pig gagctcatgaa Chinchilla gagctcatgaa Brush-tailed rat gagctcatgaa B D Rabbit gacgacatgaa B D Pika gacgtcatgaa B D Pig gaggtcatgaa B D Alpaca gaggtcatgaa Bactrian camel gaggtcatgaa B D Dolphin gaggtcatgaa Killer whale gaggtcatgaa Tibetan antelope gagctcttgac B D Cow gaggtcatgaa Domestic goat gaggtcatgaa B D Horse gagctcatgaa B D White rhinoceros gagctcatgaa B D Cat gaggtcatgaa B D Dog gagctcatgaa B D Ferret gaggtcatgaa B D Panda gaggtcatgaa Pacific walrus gaggtcatgaa Weddell seal gaggtcatgaa Black flying-fox gaggtcatgaa B D Megabat gaggtcatgaa Big brown bat gagctcatgaa D Little brown bat gaggtcatgaa B D Hedgehog gagctcatgaa B D Shrew gacgacatgaa Star-nosed mole gaggtcatgaa B D Elephant gaggtcatgaa Cape elephant shrew gagcccatgaa B D Manatee gaggtcatgaa Cape golden mole gaggtcatgaa Aardvark gaagtcatgaa B D Armadillo gtggacatgaa B D Opossum gagatcatgaa B D Tasmanian devil gaaaccataaa B D Wallaby gaaaccatgaa B D Platypus gacgtcatgaa D Rock pigeon gaggtcatgaa D Saker falcon gaggtcatgaa D Peregrine falcon gaggtcatgaa D Collared flycatcher gggctcatgaa B D Zebra finch gaactcatgaa Tibetan ground jay gagctcatgaa B D Budgerigar gaggtcatgaa D Parrot gaggtcatgaa D Scarlet macaw gaggtcatgaa D Mallard duck aggaggacgag B D Chicken aagctcatgaa B D Turkey aggctcatgaa B D American alligator gaggtcatgaa D Green seaturtle gatgtcatgaa D Painted turtle gatgtcatgaa D Chinese softshell turtle gacgtcatgaa D Spiny softshell turtle gacgtcatgaa B D Lizard gaggtcatgaa B D X. tropicalis ggagtcataaa B D Coelacanth gacctcatgaa B D Tetraodon gtcttcactga B D Fugu gtcttcattga Yellowbelly pufferfish gtcttcattaa B D Nile tilapia ggcttcataaa Princess of Burundi ggcttcataaa Burton's mouthbreeder ggcttcataaa Zebra mbuna ggcttcataaa Pundamilia nyererei ggcttcataaa B D Medaka ctcttcatgaa Southern platyfish agcttcacaaa B D Stickleback tgtctcatggt B D Atlantic cod ggagtcagctg B D Zebrafish gacttcatgaa Mexican tetra (cavefish) gacttcatgaa Spotted gar gacttcatgaa B D Sheep ----------- David's myotis (bat) NNNNNNNNNNN B D Tenrec =========== Inserts between block 29 and 30 in window B D Bushbaby 3bp Alignment block 30 of 509 in window, 25161168 - 25161170, 3 bps B D Human acc B D Chimp acc B D Gorilla acc B D Orangutan acc B D Gibbon acc B D Rhesus gcc B D Crab-eating macaque gcc B D Baboon gcc B D Green monkey gcc B D Marmoset gcc B D Squirrel monkey gcc Chinese tree shrew gcc B D Squirrel gcc Lesser Egyptian jerboa gcc Prairie vole gcc B D Chinese hamster gcc Golden hamster gcc B D Mouse gcc B D Rat gcc B D Naked mole-rat gcc B D Guinea pig gcc Chinchilla gcc Brush-tailed rat gcc B D Rabbit gcc B D Pika gcc B D Pig gcc B D Alpaca tcc Bactrian camel gcc B D Dolphin acc Killer whale acc Tibetan antelope ccc B D Cow ccc Domestic goat ccc B D Horse gcc B D White rhinoceros gcc B D Cat gcc B D Dog gcc B D Ferret gcc B D Panda gcc Pacific walrus gcc Weddell seal gcc Black flying-fox gcc B D Megabat gcc Big brown bat gcc D Little brown bat gcc B D Hedgehog gcc B D Shrew gcc Star-nosed mole gcc B D Elephant gcc Cape elephant shrew gcc B D Manatee gcc Cape golden mole gcc Aardvark gcc B D Armadillo gcc B D Opossum gcc B D Tasmanian devil gcc B D Wallaby gcc B D Platypus gcc D Rock pigeon gcc D Saker falcon gcc D Peregrine falcon gcc D Collared flycatcher acc B D Zebra finch tcc Tibetan ground jay tcc B D Budgerigar gcc D Parrot gcc D Scarlet macaw gcc D Mallard duck gac B D Chicken gcc B D Turkey gcc B D American alligator gcc D Green seaturtle gcc D Painted turtle gcc D Chinese softshell turtle gcc D Spiny softshell turtle gcc B D Lizard ccc B D X. tropicalis tcc B D Coelacanth gcc B D Tetraodon ctt B D Fugu ctt Yellowbelly pufferfish ctt B D Nile tilapia gcc Princess of Burundi gcc Burton's mouthbreeder gcc Zebra mbuna gcc Pundamilia nyererei gcc B D Medaka gcc Southern platyfish ccc B D Stickleback gct B D Atlantic cod tcc B D Zebrafish gcc Mexican tetra (cavefish) gcc Spotted gar gcc B D Sheep --- David's myotis (bat) NNN B D Tenrec === B D Bushbaby === Alignment block 31 of 509 in window, 25161171 - 25161187, 17 bps B D Human gccgtagcgcttgtcct B D Chimp gccgtagcgcttgtcct B D Gorilla gccgtagcgcttgtcct B D Orangutan gccgtagcgcttgtcct B D Gibbon gccgtagcgcttgtcct B D Rhesus gccgtagcgcttgtcct B D Crab-eating macaque gccgtagcgcttgtcct B D Baboon gccgtagcgcttgtcct B D Green monkey gccgtagcgcttgtcct B D Marmoset gccgtagcgcttgtcct B D Squirrel monkey gccgtagcgcttgtcct B D Bushbaby gccgtagcgcttgtcct Chinese tree shrew tccgtagcgcttgtcct B D Squirrel gccgtagcgcttgtcct Lesser Egyptian jerboa gccgtagcgcttgtcct Prairie vole gccatagcgcttgtcct B D Chinese hamster gccatagcgcttgtcct Golden hamster gccgtagcgcttgtcct B D Mouse accgtaacgcttgtcct B D Rat gccgtagcgcttgtcct B D Naked mole-rat gccgtagcgcttgtcct B D Guinea pig gccgtagcgcttgccct Chinchilla gccgtagcgcttgtcct Brush-tailed rat gccatagcgcttgtcct B D Rabbit gccgtagcgcttgtcct B D Pika gccgtagcgcttgtcct B D Pig gccgtagcgcttgtcct B D Alpaca gccgtagcgcttgtcct Bactrian camel cccgtagcgtttgtcct B D Dolphin gccgtagcgcttgtcct Killer whale gccgtagcgcttgtcct Tibetan antelope gccgtagcgcttgtcct B D Cow gccgtagcgcttgtcct B D Sheep ----tagcgcttgtcct Domestic goat gccgtagcgcttgtcct B D Horse gccgtagcgcttgtcct B D White rhinoceros gccgtagcgcttgtcct B D Cat gccgtagcgcttgtcct B D Dog gccgtagcgcttgtcct B D Ferret gccgtagcgcttgtcct B D Panda gccgtagcgcttgtcct Pacific walrus gccgtagcgcttgtcct Weddell seal gccgtagcgcttgtcct Black flying-fox gccgtagcgcttgtcct B D Megabat gccgtagcgcttgtcct Big brown bat gccgtagcgcttgttct D Little brown bat gccgtagcgcttgtcct B D Hedgehog gccgtagcgcttgtcct B D Shrew gccgtaccgcttgtcct Star-nosed mole gccgtagcgcttgtcct B D Elephant gccgtagcgcttgtcct Cape elephant shrew gccgtaacgcttgtcct B D Manatee gccgtagcgcttgtcct Cape golden mole gccatagcgtttgtcct Aardvark gccgtagcgcttgtcct B D Armadillo gccgtagcgcttgtcct B D Opossum accataccgcttatcct B D Tasmanian devil accatatcgcttattcc B D Wallaby accatacctcttattcc B D Platypus tccgtagcgcttgtcct D Rock pigeon cccgtagcgcttgtcct D Saker falcon cccatagcgcttgtcct D Peregrine falcon cccatagcgcttgtcct D Collared flycatcher cccgtaacgtttctcct B D Zebra finch gccgtaacgcttctcct Tibetan ground jay cccgtagcgcttttcct B D Budgerigar cccgtagcgcttgtcct D Parrot cccgtagcgcttgtcct D Scarlet macaw cccgtagcgcttgtcct D Mallard duck gccgtagcgcttgtcct B D Chicken gccgtagcgcttgtcct B D Turkey tccgtagcgcttgtcct B D American alligator gccgtaccgcttgtcca D Green seaturtle cccgtatcgcttgtctt D Painted turtle cccgtatcgcttgtctt D Chinese softshell turtle cccgtatcgcttgtctt D Spiny softshell turtle cccgtatcgcttgtctt B D Lizard gccgtaacgcttccgct B D X. tropicalis cccatatctcttatctt B D Coelacanth cccgtaacgcttgttct B D Tetraodon gtcgttacgtttggaga B D Fugu cttgctgcgttcggaga Yellowbelly pufferfish gttgctgcgtttggaga B D Nile tilapia gccgttacgtttggatg Princess of Burundi gccgttacgtttggatg Burton's mouthbreeder gccgttacgtttggatg Zebra mbuna gccgttacgtttggatg Pundamilia nyererei gccgttacgtttggatg B D Medaka gccatagcgtttactgg Southern platyfish attgttttgtttggatg B D Stickleback gccgttgcgcttggagg B D Atlantic cod gtcgccgcgcttgg--- B D Zebrafish tccatagcgcttgctag Mexican tetra (cavefish) tccgtagcgcttgcttg Spotted gar cccgtaccgcttgtcct David's myotis (bat) NNNNNNNNNNNNNNNNN B D Tenrec ================= Inserts between block 31 and 32 in window B D Horse 258bp B D Wallaby 24bp Alignment block 32 of 509 in window, 25161188 - 25161233, 46 bps B D Human tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Chimp tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Gorilla tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Orangutan tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Gibbon tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Rhesus tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Crab-eating macaque tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Baboon tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Green monkey tgggc---gggctgccccagcggaagtgctccatcctgtaggggac---ccc B D Marmoset tgggc---gggctgccccagcggaagtgctccatcctgtacggtcc---ttc B D Squirrel monkey tgggc---gggctgccccagcggaagtgctccatcctgtaggggcc---gtc B D Bushbaby tgggc---gggctgccccagcggaagtgctccatcctgtagggccc---ctc Chinese tree shrew tgggc---gggctgccccagcggaagtgctccatccgatagggccc---ctc B D Squirrel tgggc---gggctgccccagcggaagtgctccatgcgataaggccc---gtc Lesser Egyptian jerboa tgggc---gggccgccccagcggaagcgctcctcccggtagggccc---gcc Prairie vole tgggc---gtgctgccccagcggaagcgctccatccggtagggccc---atc B D Chinese hamster tgggc---gggctgccccagcggaagcgctccatccgatagggccc---gtc Golden hamster tgggc---gggctgccccagcggaagcgctccacccgatagggccc---gtc B D Mouse tgggc---gggttgctccagcggaagtgctccacccggtagggccc---gtc B D Rat tgggc---gggttgccccagcggaagtgctccacccgatagggccc---gtc B D Naked mole-rat tgcgc---gggctgccccagcgaaagtgctccatgcgatagggccc---gtc B D Guinea pig tgcgc---ggggtgccccagcggaagtgctccatgcgataggaccc---gtc Chinchilla tgcgc---ggcgtgccccagcggaagtgctccatgcgatagggccc---gtc Brush-tailed rat tgcgc---ggggtgccccagcggaagtgctccatgcggtagggccc---gtc B D Rabbit tgggc---cggctgccccagcggaagtgctccatcctgtaggggcc---ctc B D Pika tgggc---gggctgccccagcgaaagtgctccatgcggtagggccc---gtc B D Pig tgggc---gggctgccccagcggaagtgctccatcttatagggccc---ttc B D Alpaca tgggc---gggctgccccagcggaagtgctgcatcttataggggcc---ccc Bactrian camel tgggc---gggctgccccagcggaagtgctgcatcttataggggcc---ccc B D Dolphin tgggc---gggctgccccagcggaagtgctccatcttatacggccc---ctc Killer whale tgggc---gggctgccccagcggaagtgctccatcttatacggccc---ctc Tibetan antelope tgggc---gggctgccccagcggaagtgttccatcttgtagggccc---cga B D Cow tgggc---gggctgccccagcggaagtgttccatcttatagggccc---cga B D Sheep tgggc---gggctgccccagcggaagtgttccatcttatagggccc---cga Domestic goat tgggc---gggctgccccagcggaagtgttccatcttatagggccc---cga B D White rhinoceros tgggc---gggctgccccagcggaaatgctccatcttatagggccc---ctc B D Cat tgggc---gggctgccccagcggaaatgctccatcttatagggccc---ttc B D Dog tgggc---gggctgccccagcggaagtgctccatcttgtagggccc---gtc B D Ferret tgggc---gggctgccccagcggaagtgctccatcttgtagggccc---gac B D Panda tgggc---gggctgccccagcggaagtgctccatcttatagggccc---gtc Pacific walrus tgggc---gggctgccccagcggaagtgctccatcttatagggccc---acc Weddell seal tgggc---gggctgccccagcggaagtgctccatcttatagggccc---gcc Black flying-fox tgggc---gggctgccccagcggaagtgctccatcctatagggccc---ctc B D Megabat tgggc---gggctgccccagcggaagtgctccatcctatagggccc---ctc Big brown bat tgggc---cggctgccccagcggaagtgctccatcttgtagggccc---ctc D Little brown bat tgggc---gggctgccccagcggaagtgctccatccggtagggccc---ctc B D Hedgehog tgcgc---gggctgccccagcggaagtgctccatcttgtagggtcc---gcc B D Shrew tgggc---gggctgccccagcggaagtgctccatcttgtagggcgt---ccc Star-nosed mole tgggc---gggctgccccagcggaaatgcttcatctggtaggcccc---gtc B D Elephant tggcg---gggctgccccagcggaagtgctccatcttgtagggccc---ctc Cape elephant shrew tgggc---gggctgccccagcggaagtgctccatgcggtacgggcc---gtc B D Manatee tgggc---gggctgccccaacggaagtgctccatcttatagggccc---ctc Cape golden mole taggc---gggctgccccagcggaaatgctccattttataaggccc---gtc Aardvark tgggc---gggctgccccagcggaagtgctccatcttatagggccc---ctt B D Armadillo tgggc---gggctgtccgagctaaagcgctcccgcttagagggcca---ctc B D Opossum tggga---ggggtaccccaccggaaatgctccatcttatag-cccc------ B D Tasmanian devil tggga---gaggtaccccaccagaaatgctccatattatag-cccc------ B D Wallaby tagga---ggggtaccccaccggaaatgctccatcctatagacccc------ B D Platypus tagcc---ggtctgccccaccgaaagtgtcgcatccggtagacctc---ccc D Rock pigeon tcaag---ggtgcgtgccaacggaaatggcgcatgcggtaggaccc---gcc D Saker falcon tcaag---ggcacatgccagggaagatggcacatgcggtaggagcc---acc D Peregrine falcon tcaag---ggcacatgccagggaagatggcacatgcggtaggagcc---acc D Collared flycatcher tct------gggaattccacgggaatt----------------tcg---gga B D Zebra finch tcc------gggaattccacgggaatt----------------ccg---gga Tibetan ground jay tcc------gggaatcccacgggaatt----------------ccc---aac B D Budgerigar tcatg---ggggtgtgccagcggaagtggtgcatgcggtacgagcc---gcc D Parrot tcgtg---ggggtgtgccagcggaagtggtgcatgcggtatgagcc---gcc D Scarlet macaw tcgtg---ggggtgtgccagcggaagtggtgcatgcggtacgagcc---gcc D Mallard duck tcagc---ggcgcgtgccagcggaaatggcgcatgcggtaggagcc---gct B D Chicken tcagc---ggcgcgtgccagcggaagtgccgcatgcggtacgagcc---tcc B D Turkey tcagc---ggcgcgtgccagcggaagtgccgcatgcggtacgagcc---gcc B D American alligator gggcc---ggcgcgttccagcggaagtggcgcatcttgtaggcccc---gcc D Green seaturtle tgggc---ggggtgttccatcggaaatggtgcatcttgtaggactc---tcc D Painted turtle tgggc---ggggtgttccatcggaaatggtgcatcttgtaggactt---tcc D Chinese softshell turtle tgggc---ggggcgttccatcggaaatggtgcatcttgtaggaatt---tcc D Spiny softshell turtle tggga---ggggagttccatcggaaatggtgcatcttgtaggaatt---tcc B D Lizard tcggggctggggcaccccaccggaagtggttcatcttgta---------gcc B D X. tropicalis tgggt---gggctgccccatcggaagtgatgcatcctgtagtttcc---att B D Coelacanth tgggt---gggctgctccagcggaagtggtgcatcttgtagttgcc------ B D Tetraodon cgttg---gggctcccccatctgaagtggttcatctggtaggtccc------ B D Fugu cgttg---gggctcccccacctgaagtggctcatctggtaggtccc------ Yellowbelly pufferfish cgttg---gggctcccccacctgaagtggctcatctggtaggtccc------ B D Nile tilapia caggt---gggctgccccatctgaagtgactcatcttataggtcct------ Princess of Burundi caggt---gggctgccccatctgaagtgactcatcttataggtcct------ Burton's mouthbreeder caggt---gggctgccccatctgaagtgactcatcttataggtcct------ Zebra mbuna caggt---gggctgccccatctgaagtgactcatcttataggtcct------ Pundamilia nyererei caggt---gggctgccccatctgaagtgactcatcttataggtcct------ B D Medaka cggga---gggccgctccagcggaaatgcttcatcttgtaggagcc------ Southern platyfish caagc---gggctgccccatctgaagtgactcatcctgtaggtctc------ B D Stickleback ggggc---gggctcccccatcggaagtggctcatccgataggcgcc------ B D Atlantic cod ---gc---gggctcccccagcggaagtgactcatccggtacgtcccggg--- B D Zebrafish ccggc---gggacgctccagcggaaatgggtcattttgtagggggg------ Mexican tetra (cavefish) cgggc---ggctcgctccagcggaagtggttcatcttgtaggaacc------ Spotted gar tgggc---gggccgctccagcggaagtggtgcattttgtaggagcc------ David's myotis (bat) NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN B D Tenrec ==================================================== B D Horse ==================================================== Inserts between block 32 and 33 in window B D Alpaca 436bp B D Opossum 4bp B D Tasmanian devil 4bp B D Wallaby 4bp B D Platypus 15bp Alignment block 33 of 509 in window, 25161234 - 25161271, 38 bps B D Human gtccttctt------ctcggcc------------------------------------------------ B D Chimp gtccttctt------ctcggcc------------------------------------------------ B D Gorilla gtccttctt------ctcggcc------------------------------------------------ B D Orangutan gtccttctt------ctcggcc------------------------------------------------ B D Gibbon gtccttctt------ctcggcc------------------------------------------------ B D Rhesus atccttctt------ctcggcc------------------------------------------------ B D Crab-eating macaque atccttctt------ctcggcc------------------------------------------------ B D Baboon atccttctt------ctcggcc------------------------------------------------ B D Green monkey atccttctt------ctcggcc------------------------------------------------ B D Marmoset gtctttctt------ctcagcc------------------------------------------------ B D Squirrel monkey gtctttctt------ctcggcc------------------------------------------------ B D Bushbaby gtccttctt------cccgacc------------------------------------------------ Chinese tree shrew gtccttctt------ctctgcc-------------------