Human Gene YWHAE (uc002fsj.3)
  Description: Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (YWHAE), transcript variant 1, mRNA.
RefSeq Summary (NM_006761): This gene product belongs to the 14-3-3 family of proteins which mediate signal transduction by binding to phosphoserine-containing proteins. This highly conserved protein family is found in both plants and mammals, and this protein is 100% identical to the mouse ortholog. It interacts with CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting its role in diverse biochemical activities related to signal transduction, such as cell division and regulation of insulin sensitivity. It has also been implicated in the pathogenesis of small cell lung cancer. Two transcript variants, one protein-coding and the other non-protein-coding, have been found for this gene. [provided by RefSeq, Aug 2008].
Transcript (Including UTRs)
   Position: hg19 chr17:1,247,834-1,303,556 Size: 55,723 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr17:1,248,741-1,303,404 Size: 54,664 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:1,247,834-1,303,556)mRNA (may differ from genome)Protein (255 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: 1433E_HUMAN
DESCRIPTION: RecName: Full=14-3-3 protein epsilon; Short=14-3-3E;
FUNCTION: Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.
SUBUNIT: Homodimer. Heterodimerizes with YWHAZ. Interacts with NDEL1, ARHGEF28 and TIAM2 (By similarity). Interacts with HCV core protein. Interacts with ABL1 (phosphorylated form); the interaction retains it in the cytoplasm. Weakly interacts with CDKN1B. Interacts with GAB2. Interacts with phosphorylated GRB10. Interacts with PKA-phosphorylated AANAT. Interacts with the phosphorylated (by AKT1) form of SRPK2.
INTERACTION: O00257-3:CBX4; NbExp=2; IntAct=EBI-356498, EBI-4392727; O94921:CDK14; NbExp=3; IntAct=EBI-356498, EBI-1043945; Q9UKT5:FBXO4; NbExp=5; IntAct=EBI-356498, EBI-960409; Q14678-2:KANK1; NbExp=3; IntAct=EBI-356498, EBI-6173812; P61981:YWHAG; NbExp=4; IntAct=EBI-356498, EBI-359832;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Melanosome. Note=Identified by mass spectrometry in melanosome fractions from stage I to stage IV.
SIMILARITY: Belongs to the 14-3-3 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): YWHAE
CDC HuGE Published Literature: YWHAE
Positive Disease Associations: suicide
Related Studies:
  1. suicide
    Yanagi, M. et al. 2005, Association of 14-3-3 epsilon gene haplotype with completed suicide in Japanese., Journal of human genetics. 2005 ;50(4):210-6. [PubMed 15838597]
    This finding suggests that 14-3-3 epsilon is a potential suicide susceptibility gene and implies that dysregulation of neurogenesis may be involved in suicide.

-  MalaCards Disease Associations
  MalaCards Gene Search: YWHAE
Diseases sorted by gene-association score: endometrial stromal sarcoma* (211), kidney clear cell sarcoma* (202), miller-dieker lissencephaly syndrome* (94), distal 17p13.3 microdeletion syndrome* (25), chromosome 17p13.3, centromeric, duplication syndrome* (23), endometrial stromal nodule (3), left ventricular noncompaction (3), juvenile astrocytoma (3), neuronal migration disorders (2), ohdo syndrome (2), tricuspid valve stenosis (1), mental retardation, x-linked syndromic, lubs type (1), retinitis pigmentosa (0)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C023514 2,6-dinitrotoluene
  • C496186 2-trans-4-trans-decadienal
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C119130 4-(5-(4-chlorophenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl)benzenesulfonamide
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D000082 Acetaminophen
  • D000643 Ammonium Chloride
  • D001151 Arsenic
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 291.11 RPKM in Brain - Amygdala
Total median expression: 7322.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -60.00152-0.395 Picture PostScript Text
3' UTR -225.10907-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000308 - 14-3-3
IPR023409 - 14-3-3_CS
IPR023410 - 14-3-3_domain

Pfam Domains:
PF00244 - 14-3-3 protein

SCOP Domains:
48445 - 14-3-3 protein

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2BR9 - X-ray MuPIT 3UAL - X-ray MuPIT 3UBW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P62258
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologGenome Browser
Gene Details  Gene Details Gene Details
Gene Sorter  Gene Sorter Gene Sorter
  EnsemblFlyBase SGD
  Protein SequenceProtein Sequence Protein Sequence
  AlignmentAlignment Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005246 calcium channel regulator activity
GO:0005515 protein binding
GO:0015459 potassium channel regulator activity
GO:0017112 Rab guanyl-nucleotide exchange factor activity
GO:0019899 enzyme binding
GO:0019904 protein domain specific binding
GO:0023026 MHC class II protein complex binding
GO:0031625 ubiquitin protein ligase binding
GO:0042802 identical protein binding
GO:0042826 histone deacetylase binding
GO:0044325 ion channel binding
GO:0044877 macromolecular complex binding
GO:0045296 cadherin binding
GO:0046982 protein heterodimerization activity
GO:0050815 phosphoserine binding
GO:0051219 phosphoprotein binding
GO:0097110 scaffold protein binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000165 MAPK cascade
GO:0001764 neuron migration
GO:0003064 regulation of heart rate by hormone
GO:0006605 protein targeting
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0016032 viral process
GO:0021762 substantia nigra development
GO:0021766 hippocampus development
GO:0021987 cerebral cortex development
GO:0034605 cellular response to heat
GO:0035308 negative regulation of protein dephosphorylation
GO:0035329 hippo signaling
GO:0035556 intracellular signal transduction
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0046827 positive regulation of protein export from nucleus
GO:0051480 regulation of cytosolic calcium ion concentration
GO:0060306 regulation of membrane repolarization
GO:0061024 membrane organization
GO:0086013 membrane repolarization during cardiac muscle cell action potential
GO:0086091 regulation of heart rate by cardiac conduction
GO:0097711 ciliary basal body docking
GO:1900034 regulation of cellular response to heat
GO:1900740 positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
GO:1901016 regulation of potassium ion transmembrane transporter activity
GO:1901020 negative regulation of calcium ion transmembrane transporter activity
GO:1902309 negative regulation of peptidyl-serine dephosphorylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0005871 kinesin complex
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0030424 axon
GO:0042470 melanosome
GO:0070062 extracellular exosome
GO:0090724 central region of growth cone
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  BC000179 - Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide, mRNA (cDNA clone MGC:5005 IMAGE:2900956), complete cds.
AY883089 - Homo sapiens 14-3-3 protein epsilon isoform transcript variant 1 (YWHAE) mRNA, complete cds, alternatively spliced.
AK128785 - Homo sapiens cDNA FLJ45465 fis, clone BRSTN2012174, highly similar to 14-3-3 protein epsilon (14-3-3E).
AX775995 - Sequence 265 from Patent WO03048202.
U43399 - Human 14-3-3 protein epsilon isoform mRNA, complete cds.
U43430 - Human epsilon isoform 14-3-3 protein mRNA, complete cds.
BC001440 - Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide, mRNA (cDNA clone MGC:1250 IMAGE:3139004), complete cds.
EU794581 - Homo sapiens epididymis luminal protein 2 (HEL2) mRNA, complete cds.
U54778 - Human 14-3-3 epsilon mRNA, complete cds.
JD333901 - Sequence 314925 from Patent EP1572962.
JD032034 - Sequence 13058 from Patent EP1572962.
JD024580 - Sequence 5604 from Patent EP1572962.
JD151417 - Sequence 132441 from Patent EP1572962.
JD151416 - Sequence 132440 from Patent EP1572962.
JD413597 - Sequence 394621 from Patent EP1572962.
JD126728 - Sequence 107752 from Patent EP1572962.
JD554829 - Sequence 535853 from Patent EP1572962.
JD399036 - Sequence 380060 from Patent EP1572962.
JD240076 - Sequence 221100 from Patent EP1572962.
JD163625 - Sequence 144649 from Patent EP1572962.
L13388 - Homo sapiens (clone 8-1) Miller-Dieker lissencephaly protein (LIS1) mRNA.
JD354906 - Sequence 335930 from Patent EP1572962.
JD231677 - Sequence 212701 from Patent EP1572962.
AK316185 - Homo sapiens cDNA, FLJ79084 complete cds, highly similar to 14-3-3 protein epsilon (14-3-3E).
AK295260 - Homo sapiens cDNA FLJ51851 complete cds, highly similar to 14-3-3 protein epsilon (14-3-3E).
AK316201 - Homo sapiens cDNA, FLJ79100 complete cds, highly similar to 14-3-3 protein epsilon (14-3-3E).
JD235182 - Sequence 216206 from Patent EP1572962.
JD352165 - Sequence 333189 from Patent EP1572962.
JD454743 - Sequence 435767 from Patent EP1572962.
JD533973 - Sequence 514997 from Patent EP1572962.
JD551628 - Sequence 532652 from Patent EP1572962.
JD096332 - Sequence 77356 from Patent EP1572962.
JD387899 - Sequence 368923 from Patent EP1572962.
U20972 - Human 14-3-3 protein epsilon isoform mRNA, complete cds.
AK296050 - Homo sapiens cDNA FLJ51975 complete cds, moderately similar to 14-3-3 protein epsilon (14-3-3E).
AK295997 - Homo sapiens cDNA FLJ60092 complete cds, highly similar to 14-3-3 protein epsilon (14-3-3E).
JD110022 - Sequence 91046 from Patent EP1572962.
U28936 - Human epsilon 14-3-3 protein mRNA, complete cds.
CU674076 - Synthetic construct Homo sapiens gateway clone IMAGE:100018617 5' read YWHAE mRNA.
KJ904589 - Synthetic construct Homo sapiens clone ccsbBroadEn_13983 YWHAE-like gene, encodes complete protein.
BT007161 - Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide mRNA, complete cds.
EU176525 - Synthetic construct Homo sapiens clone IMAGE:100011640; FLH263998.01L; RZPDo839C09245D tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (YWHAE) gene, encodes complete protein.
AB590347 - Synthetic construct DNA, clone: pFN21AE2194, Homo sapiens YWHAE gene for tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide, without stop codon, in Flexi system.
JN999698 - Homo sapiens YWHAE/FAM22A fusion protein (YWHAE/FAM22A fusion) mRNA, partial cds.
JN999699 - Homo sapiens YWHAE/FAM22B fusion protein (YWHAE/FAM22B fusion) mRNA, partial cds.
DL490421 - Novel nucleic acids.
AK296555 - Homo sapiens cDNA FLJ53559 complete cds.
DL492455 - Novel nucleic acids.
DL490933 - Novel nucleic acids.
JD163421 - Sequence 144445 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04110 - Cell cycle
hsa04114 - Oocyte meiosis
hsa04722 - Neurotrophin signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein P62258 (Reactome details) participates in the following event(s):

R-HSA-8863674 CDC25C binds YWHAE (14-3-3-epsilon)
R-HSA-204981 14-3-3epsilon attentuates NADE-related apoptosis
R-HSA-2028651 YWHAE (14-3-3 epsilon) dimer binds phosphorylated WWTR1 (TAZ)
R-HSA-4793925 p-S303,307-HSF1 binds YWHAE (14-3-3)
R-HSA-8933452 YWHAE dimer binds phosphorylated DENND1 proteins
R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-75016 Association of p-S216-CDC25C with 14-3-3 proteins
R-HSA-139899 Sequestration of BAD protein by 14-3-3
R-HSA-1445149 14-3-3 binds p-5S,T642-AS160 (TBC1D4)
R-HSA-1454689 14-3-3 Binds p-S237-TBC1D1
R-HSA-5632732 p-S939,T1462-TSC2 binding to 14-3-3 dimer is negatively regulated by DDIT4
R-HSA-5632738 DDIT4 binds 14-3-3 dimer
R-HSA-139906 Activation of BAD by calcineurin
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-8877612 DENND1s exchange GTP for GDP on RAB35
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-8862803 Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models
R-HSA-205025 NADE modulates death signalling
R-HSA-2028269 Signaling by Hippo
R-HSA-3371453 Regulation of HSF1-mediated heat shock response
R-HSA-8876198 RAB GEFs exchange GTP for GDP on RABs
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-8863678 Neurodegenerative Diseases
R-HSA-75035 Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex
R-HSA-5625740 RHO GTPases activate PKNs
R-HSA-111447 Activation of BAD and translocation to mitochondria
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-204998 Cell death signalling via NRAGE, NRIF and NADE
R-HSA-162582 Signal Transduction
R-HSA-3371556 Cellular response to heat stress
R-HSA-9007101 Rab regulation of trafficking
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-1643685 Disease
R-HSA-69473 G2/M DNA damage checkpoint
R-HSA-195258 RHO GTPase Effectors
R-HSA-114452 Activation of BH3-only proteins
R-HSA-199991 Membrane Trafficking
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-193704 p75 NTR receptor-mediated signalling
R-HSA-2262752 Cellular responses to stress
R-HSA-68877 Mitotic Prometaphase
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-69481 G2/M Checkpoints
R-HSA-194315 Signaling by Rho GTPases
R-HSA-109606 Intrinsic Pathway for Apoptosis
R-HSA-5653656 Vesicle-mediated transport
R-HSA-212436 Generic Transcription Pathway
R-HSA-73887 Death Receptor Signalling
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-68886 M Phase
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-109581 Apoptosis
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle
R-HSA-5357801 Programmed Cell Death
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: 1433E_HUMAN, B3KY71, D3DTH5, NM_006761, NP_006752, P29360, P42655, P62258, Q4VJB6, Q53XZ5, Q63631, Q7M4R4
UCSC ID: uc002fsj.3
RefSeq Accession: NM_006761
Protein: P62258 (aka 1433E_HUMAN or 143E_HUMAN)
CCDS: CCDS11001.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_006761.4
exon count: 6CDS single in 3' UTR: no RNA size: 1827
ORF size: 768CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1369.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.