Human Gene WNT11 (uc001oxe.3)
  Description: Homo sapiens wingless-type MMTV integration site family, member 11 (WNT11), mRNA.
RefSeq Summary (NM_004626): The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis and in several developmental processes, including regulation of cell fate and patterning during embryogenesis. This gene is a member of the WNT gene family. It encodes a protein which shows 97%, 85%, and 63% amino acid identity with mouse, chicken, and Xenopus Wnt11 protein, respectively. This gene may play roles in the development of skeleton, kidney and lung, and is considered to be a plausible candidate gene for High Bone Mass Syndrome. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr11:75,897,370-75,917,574 Size: 20,205 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr11:75,898,109-75,917,451 Size: 19,343 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:75,897,370-75,917,574)mRNA (may differ from genome)Protein (354 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeTreefamUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WNT11_HUMAN
DESCRIPTION: RecName: Full=Protein Wnt-11; Flags: Precursor;
FUNCTION: Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein. May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters.
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Expressed in fetal lung, kidney, adult heart, liver, skeletal muscle, and pancreas.
PTM: Palmitoylation at Ser-215 is required for efficient binding to frizzled receptors. It is also required for subsequent palmitoylation at Cys-80. Palmitoylation is necessary for proper trafficking to cell surface (By similarity).
SIMILARITY: Belongs to the Wnt family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): WNT11
CDC HuGE Published Literature: WNT11
Positive Disease Associations: Electrocardiography , Heart Failure , Stroke
Related Studies:
  1. Electrocardiography
    Arne Pfeufer et al. Nature genetics 2010, Genome-wide association study of PR interval., Nature genetics. [PubMed 20062060]
  2. Heart Failure
    , , . [PubMed 0]
  3. Heart Failure
    , , . [PubMed 0]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: WNT11
Diseases sorted by gene-association score: mass syndrome (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.14 RPKM in Adipose - Subcutaneous
Total median expression: 139.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.20123-0.514 Picture PostScript Text
3' UTR -283.40739-0.383 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005817 - Wnt
IPR026536 - Wnt-11
IPR018161 - Wnt_CS

Pfam Domains:
PF00110 - wnt family

ModBase Predicted Comparative 3D Structure on O96014
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005102 receptor binding
GO:0005109 frizzled binding
GO:0005515 protein binding
GO:0030295 protein kinase activator activity
GO:0044212 transcription regulatory region DNA binding

Biological Process:
GO:0001649 osteoblast differentiation
GO:0001822 kidney development
GO:0001837 epithelial to mesenchymal transition
GO:0003151 outflow tract morphogenesis
GO:0003402 planar cell polarity pathway involved in axis elongation
GO:0006468 protein phosphorylation
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0007275 multicellular organism development
GO:0010628 positive regulation of gene expression
GO:0016055 Wnt signaling pathway
GO:0030154 cell differentiation
GO:0030182 neuron differentiation
GO:0030282 bone mineralization
GO:0030308 negative regulation of cell growth
GO:0030325 adrenal gland development
GO:0030335 positive regulation of cell migration
GO:0030336 negative regulation of cell migration
GO:0031667 response to nutrient levels
GO:0032147 activation of protein kinase activity
GO:0032915 positive regulation of transforming growth factor beta2 production
GO:0034394 protein localization to cell surface
GO:0035567 non-canonical Wnt signaling pathway
GO:0043065 positive regulation of apoptotic process
GO:0043066 negative regulation of apoptotic process
GO:0043547 positive regulation of GTPase activity
GO:0045165 cell fate commitment
GO:0045199 maintenance of epithelial cell apical/basal polarity
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0048341 paraxial mesoderm formation
GO:0048570 notochord morphogenesis
GO:0048706 embryonic skeletal system development
GO:0048844 artery morphogenesis
GO:0051496 positive regulation of stress fiber assembly
GO:0060021 palate development
GO:0060028 convergent extension involved in axis elongation
GO:0060070 canonical Wnt signaling pathway
GO:0060071 Wnt signaling pathway, planar cell polarity pathway
GO:0060197 cloacal septation
GO:0060412 ventricular septum morphogenesis
GO:0060484 lung-associated mesenchyme development
GO:0060548 negative regulation of cell death
GO:0060675 ureteric bud morphogenesis
GO:0060775 planar cell polarity pathway involved in gastrula mediolateral intercalation
GO:0061037 negative regulation of cartilage development
GO:0061053 somite development
GO:0061101 neuroendocrine cell differentiation
GO:0070830 bicellular tight junction assembly
GO:0071260 cellular response to mechanical stimulus
GO:0071300 cellular response to retinoic acid
GO:0072177 mesonephric duct development
GO:0072201 negative regulation of mesenchymal cell proliferation
GO:0090037 positive regulation of protein kinase C signaling
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0090272 negative regulation of fibroblast growth factor production

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  Y12692 - Homo sapiens mRNA for WNT11 gene.
AK075540 - Homo sapiens cDNA PSEC0240 fis, clone OVARC1001510, highly similar to WNT-11 PROTEIN PRECURSOR.
JD422197 - Sequence 403221 from Patent EP1572962.
JD164553 - Sequence 145577 from Patent EP1572962.
JD294680 - Sequence 275704 from Patent EP1572962.
AB070218 - Homo sapiens mRNA for WNT11, complete cds.
JD300427 - Sequence 281451 from Patent EP1572962.
JD300838 - Sequence 281862 from Patent EP1572962.
JD488279 - Sequence 469303 from Patent EP1572962.
JD391020 - Sequence 372044 from Patent EP1572962.
JD470527 - Sequence 451551 from Patent EP1572962.
JD402834 - Sequence 383858 from Patent EP1572962.
JD216246 - Sequence 197270 from Patent EP1572962.
BC113386 - Homo sapiens wingless-type MMTV integration site family, member 11, mRNA (cDNA clone MGC:141946 IMAGE:8322438), complete cds.
BC113388 - Homo sapiens wingless-type MMTV integration site family, member 11, mRNA (cDNA clone MGC:141948 IMAGE:8322440), complete cds.
JQ715612 - Homo sapiens Wnt11 isoform 1 mRNA, complete cds, alternatively spliced.
JQ715613 - Homo sapiens Wnt11 isoform 4 mRNA, complete cds, alternatively spliced.
JD070860 - Sequence 51884 from Patent EP1572962.
JD304352 - Sequence 285376 from Patent EP1572962.
JD202737 - Sequence 183761 from Patent EP1572962.
JD073548 - Sequence 54572 from Patent EP1572962.
JD539329 - Sequence 520353 from Patent EP1572962.
JD106984 - Sequence 88008 from Patent EP1572962.
JD544048 - Sequence 525072 from Patent EP1572962.
JD197681 - Sequence 178705 from Patent EP1572962.
BC074790 - Homo sapiens wingless-type MMTV integration site family, member 11, mRNA (cDNA clone MGC:104111 IMAGE:30915564), complete cds.
BC074791 - Homo sapiens wingless-type MMTV integration site family, member 11, mRNA (cDNA clone MGC:103953 IMAGE:30915347), complete cds.
JD190612 - Sequence 171636 from Patent EP1572962.
JD396820 - Sequence 377844 from Patent EP1572962.
JF800675 - Homo sapiens cell-line HT29 Wnt11 isoform 3 mRNA, complete cds.
AK313570 - Homo sapiens cDNA, FLJ94134, Homo sapiens wingless-type MMTV integration site family, member 11(WNT11), mRNA.
BT019492 - Homo sapiens wingless-type MMTV integration site family, member 11 mRNA, complete cds.
AB590784 - Synthetic construct DNA, clone: pFN21AE1837, Homo sapiens WNT11 gene for wingless-type MMTV integration site family, member 11, without stop codon, in Flexi system.
JD416048 - Sequence 397072 from Patent EP1572962.
JD055039 - Sequence 36063 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04310 - Wnt signaling pathway
hsa04340 - Hedgehog signaling pathway
hsa04916 - Melanogenesis
hsa05200 - Pathways in cancer
hsa05217 - Basal cell carcinoma

Reactome (by CSHL, EBI, and GO)

Protein O96014 (Reactome details) participates in the following event(s):

R-HSA-201708 Frizzled receptors bind Wnts
R-HSA-3238694 PORCN palmitoleoylates N-glycosyl WNTs
R-HSA-3247843 secretion of WNT ligands
R-HSA-3858491 WNTs bind the FZD receptor to initiate PCP pathway
R-HSA-3965446 WNT5A and WNT11 bind FZD receptors to initiate Ca2+ signaling
R-HSA-3247840 WLS binds WNT ligands in the Golgi
R-HSA-3858482 DVL is recruited to the receptor
R-HSA-3858480 WNT-dependent phosphorylation of DVL
R-HSA-3965441 FZD recruits trimeric G-proteins
R-HSA-3965447 G-protein subunits dissociate from WNT:FZD complex
R-HSA-3965444 WNT:FZD complex promotes G-protein nucleotide exchange
R-HSA-373080 Class B/2 (Secretin family receptors)
R-HSA-3238698 WNT ligand biogenesis and trafficking
R-HSA-4086400 PCP/CE pathway
R-HSA-4086398 Ca2+ pathway
R-HSA-500792 GPCR ligand binding
R-HSA-195721 Signaling by WNT
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2R8Z6, NM_004626, NP_004617, O96014, Q14DE8, Q8WZ98, WNT11_HUMAN
UCSC ID: uc001oxe.3
RefSeq Accession: NM_004626
Protein: O96014 (aka WNT11_HUMAN or WN11_HUMAN)
CCDS: CCDS8242.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_004626.2
exon count: 5CDS single in 3' UTR: no RNA size: 1927
ORF size: 1065CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2330.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 32# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.