Human Gene PA2G4 (uc001sjm.3)
  Description: Homo sapiens proliferation-associated 2G4, 38kDa (PA2G4), mRNA.
RefSeq Summary (NM_006191): This gene encodes an RNA-binding protein that is involved in growth regulation. This protein is present in pre-ribosomal ribonucleoprotein complexes and may be involved in ribosome assembly and the regulation of intermediate and late steps of rRNA processing. This protein can interact with the cytoplasmic domain of the ErbB3 receptor and may contribute to transducing growth regulatory signals. This protein is also a transcriptional co-repressor of androgen receptor-regulated genes and other cell cycle regulatory genes through its interactions with histone deacetylases. This protein has been implicated in growth inhibition and the induction of differentiation of human cancer cells. Six pseudogenes, located on chromosomes 3, 6, 9, 18, 20 and X, have been identified. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr12:56,498,103-56,507,694 Size: 9,592 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr12:56,498,522-56,506,672 Size: 8,151 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:56,498,103-56,507,694)mRNA (may differ from genome)Protein (394 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PA2G4_HUMAN
DESCRIPTION: RecName: Full=Proliferation-associated protein 2G4; AltName: Full=Cell cycle protein p38-2G4 homolog; Short=hG4-1; AltName: Full=ErbB3-binding protein 1;
FUNCTION: May play a role in a ERBB3-regulated signal transduction pathway. Seems be involved in growth regulation. Acts a corepressor of the androgen receptor (AR) and is regulated by the ERBB3 ligand neuregulin-1/heregulin (HRG). Inhibits transcription of some E2F1-regulated promoters, probably by recruiting histone acetylase (HAT) activity. Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly. Mediates cap-independent translation of specific viral IRESs (internal ribosomal entry site) (By similarity).
SUBUNIT: Interacts with the cytoplasmic domain of non- phosphorylated ERBB3; the interaction requires PKC activity. Interacts with AR. Treatment with HRG leads to dissociation from ERBB3 and increases association with AR. Interacts with NCL/nucleolin. Component of a ribonucleoprotein complex containing at least PA2G4, NCL, TOP1, PABPC2, RPLP0, acetylated histone H1 (HIST1H1A or H1F1), histone H1 2/4, RPL4, RPL8, RPL15, RPL18, RPL18A, RPL21, RPL11, RPL12, RPL28, RPL27, RPLP2 and RPL24. Interacts with HDAC2. Interacts with RB1; the interaction is enhanced upon PA2G4 dephosphorylation.
INTERACTION: P19338:NCL; NbExp=2; IntAct=EBI-924893, EBI-346967; P06400:RB1; NbExp=4; IntAct=EBI-924893, EBI-491274; Q96ST3:SIN3A; NbExp=4; IntAct=EBI-924893, EBI-347218;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus, nucleolus. Note=Tranlocates to the nucleus upon treatment with HRG.
TISSUE SPECIFICITY: Expressed in several cell lines tested, including primary and transformed cell lines.
PTM: Phosphorylated on serine and threonine residues. Phosphorylation is enhanced by HRG treatment. Basal phosphorylation is PKC-dependent and HRG-induced phosphorylation is predominantly PKC-independent.
MISCELLANEOUS: Does not contain metal cofactors and does not have aminopeptidase activity.
SIMILARITY: Belongs to the peptidase M24 family.
SEQUENCE CAUTION: Sequence=AAD00646.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 96.89 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1860.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -202.44419-0.483 Picture PostScript Text
3' UTR -265.151022-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004545 - Pap_1
IPR000994 - Pept_M24_structural-domain
IPR018349 - Pept_M24A_MAP2_BS
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00557 - Metallopeptidase family M24

SCOP Domains:
46785 - "Winged helix" DNA-binding domain
55920 - Creatinase/aminopeptidase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2Q8K - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9UQ80
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsemblFlyBaseWormBase 
 Protein SequenceProtein SequenceProtein SequenceProtein Sequence 
 AlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0031625 ubiquitin protein ligase binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006364 rRNA processing
GO:0006417 regulation of translation
GO:0007050 cell cycle arrest
GO:0008283 cell proliferation
GO:0043066 negative regulation of apoptotic process
GO:0043312 neutrophil degranulation
GO:0045597 positive regulation of cell differentiation
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0035578 azurophil granule lumen
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  JD234942 - Sequence 215966 from Patent EP1572962.
BC019222 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone IMAGE:4281661), partial cds.
JD271095 - Sequence 252119 from Patent EP1572962.
U87954 - Human erbB3 binding protein EBP1 mRNA, complete cds.
AK291796 - Homo sapiens cDNA FLJ75526 partial cds, highly similar to Homo sapiens proliferation-associated 2G4, 38kDa (PA2G4), mRNA.
JD072992 - Sequence 54016 from Patent EP1572962.
BC007561 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone MGC:15488 IMAGE:2988781), complete cds.
BC001951 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone MGC:4383 IMAGE:2823726), complete cds.
BC011718 - Homo sapiens cDNA clone IMAGE:4099312, **** WARNING: chimeric clone ****.
BC032111 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone IMAGE:4661091), partial cds.
BC087732 - Homo sapiens cDNA clone IMAGE:6253289, **** WARNING: chimeric clone ****.
BC072007 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone IMAGE:6645910), partial cds.
U59435 - Human cell cycle protein p38-2G4 homolog (hG4-1) mRNA, complete cds.
JD325677 - Sequence 306701 from Patent EP1572962.
JD420254 - Sequence 401278 from Patent EP1572962.
JD115031 - Sequence 96055 from Patent EP1572962.
JD098338 - Sequence 79362 from Patent EP1572962.
JD317595 - Sequence 298619 from Patent EP1572962.
JD427464 - Sequence 408488 from Patent EP1572962.
BC069786 - Homo sapiens proliferation-associated 2G4, 38kDa, mRNA (cDNA clone MGC:97310 IMAGE:7262559), complete cds.
JD160086 - Sequence 141110 from Patent EP1572962.
JD276829 - Sequence 257853 from Patent EP1572962.
JD076418 - Sequence 57442 from Patent EP1572962.
JD407375 - Sequence 388399 from Patent EP1572962.
JD462727 - Sequence 443751 from Patent EP1572962.
JD434478 - Sequence 415502 from Patent EP1572962.
JD037158 - Sequence 18182 from Patent EP1572962.
CU675707 - Synthetic construct Homo sapiens gateway clone IMAGE:100019216 5' read PA2G4 mRNA.
AB464072 - Synthetic construct DNA, clone: pF1KB8285, Homo sapiens PA2G4 gene for proliferation-associated 2G4, 38kDa, without stop codon, in Flexi system.
DQ893446 - Synthetic construct clone IMAGE:100006076; FLH199537.01X; RZPDo839H1082D proliferation-associated 2G4, 38kDa (PA2G4) gene, encodes complete protein.
DQ896751 - Synthetic construct Homo sapiens clone IMAGE:100011211; FLH199444.01L; RZPDo839H1081D proliferation-associated 2G4, 38kDa (PA2G4) gene, encodes complete protein.
KJ891745 - Synthetic construct Homo sapiens clone ccsbBroadEn_01139 PA2G4 gene, encodes complete protein.
U50137 - Human p38-2G4 mRNA, partial cds.
JD314487 - Sequence 295511 from Patent EP1572962.
JD434148 - Sequence 415172 from Patent EP1572962.
JD204172 - Sequence 185196 from Patent EP1572962.
JD545001 - Sequence 526025 from Patent EP1572962.
JD249123 - Sequence 230147 from Patent EP1572962.
JD124066 - Sequence 105090 from Patent EP1572962.
JD049258 - Sequence 30282 from Patent EP1572962.
JD424538 - Sequence 405562 from Patent EP1572962.
JD356954 - Sequence 337978 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UQ80 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-6798695 Neutrophil degranulation
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: EBP1, NM_006191, NP_006182, O43846, PA2G4_HUMAN, Q9UM59, Q9UQ80
UCSC ID: uc001sjm.3
RefSeq Accession: NM_006191
Protein: Q9UQ80 (aka PA2G4_HUMAN)
CCDS: CCDS8902.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_006191.2
exon count: 13CDS single in 3' UTR: no RNA size: 2643
ORF size: 1185CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2570.00frame shift in genome: no % Coverage: 99.36
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.