Human Gene NOS1 (uc001twn.2)
  Description: Homo sapiens nitric oxide synthase 1 (neuronal) (NOS1), transcript variant 2, mRNA.
RefSeq Summary (NM_001204218): The protein encoded by this gene belongs to the family of nitric oxide synthases, which synthesize nitric oxide from L-arginine. Nitric oxide is a reactive free radical, which acts as a biologic mediator in several processes, including neurotransmission, and antimicrobial and antitumoral activities. In the brain and peripheral nervous system, nitric oxide displays many properties of a neurotransmitter, and has been implicated in neurotoxicity associated with stroke and neurodegenerative diseases, neural regulation of smooth muscle, including peristalsis, and penile erection. This protein is ubiquitously expressed, with high level of expression in skeletal muscle. Multiple transcript variants that differ in the 5' UTR have been described for this gene but the full-length nature of these transcripts is not known. Additionally, alternatively spliced transcript variants encoding different isoforms (some testis-specific) have been found for this gene.[provided by RefSeq, Feb 2011].
Transcript (Including UTRs)
   Position: hg19 chr12:117,645,947-117,799,607 Size: 153,661 Total Exon Count: 30 Strand: -
Coding Region
   Position: hg19 chr12:117,653,114-117,768,874 Size: 115,761 Coding Exon Count: 29 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:117,645,947-117,799,607)mRNA (may differ from genome)Protein (1468 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionLynxMalacardsMGIOMIM
PubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: E9PH30_HUMAN
DESCRIPTION: SubName: Full=Nitric oxide synthase, brain;
SIMILARITY: Contains 1 PDZ (DHR) domain.
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): NOS1
CDC HuGE Published Literature: NOS1
Positive Disease Associations: Alzheimer's disease , asthma , asthma IgE , atopy , Attention Deficit Disorder with Hyperactivity , cognitive trait , cystic fibrosis , EO , infantile hypertrophic pyloric stenosis. , Meningeal Neoplasms|meningioma , neuronal NO synthase (NOS1) gene polymorphism , nitric oxide , nitric oxide, exhaled , Parkinson's disease , schizophrenia , schizophrenia; bipolar disorder , sickle cell disease , slow transit constipation , suicide , tIgE
Related Studies:
  1. Alzheimer's disease
    Galimberti, D. et al. 2007, Association of a NOS1 promoter repeat with Alzheimer's disease, Neurobiol Aging 2007. [PubMed 17418914]
  2. asthma
    Wechsler ME et al. 2000, Exhaled nitric oxide in patients with asthma: association with NOS1 genotype., American journal of respiratory and critical care medicine. 2000 Dec;162(6):2043-7. [PubMed 11112111]
    These data provide a biologically tenable link between genotype at a candidate gene in a region of linkage, NOS1, and an important component of the asthmatic phenotype, FENO. We show that addition of NOS1 genotype to the case definition of asthma allows the identification of a uniform cohort of patients, with respect to FENO, that would have been indistinguishable by other physiologic criteria. Our isolation of this homogeneous cohort of patients ties together the well-established associations among asthma, increased concentrations of NO in the exhaled air of asthmatic individuals, and variations of trinucleotide repeat sequences as identified in several neurologic conditions.
  3. Asthma
    Grasemann H 2000, , Biochemical and biophysical research communications. 2000 Jun;272(2):391-4. [PubMed 10833424]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: NOS1
Diseases sorted by gene-association score: achalasia, familial esophageal* (350), impotence (45), pyloric stenosis (42), hypertrophic pyloric stenosis (24), achalasia (14), becker muscular dystrophy (12), sexual disorder (9), intestinal perforation (9), duchenne muscular dystrophy (9), hepatic encephalopathy (9), tetrahydrobiopterin deficiency (8), progressive muscular dystrophy (8), hyperphenylalaninemia (7), acute chest syndrome (7), spinal cord injury (7), gastroparesis (7), jejunoileitis (6), cluster headache (6), radiation cystitis (6), cerebral hypoxia (5), alzheimer disease (3), lateral sclerosis (3), hirschsprung disease 1 (2), psychotic disorder (2), schizophrenia (2), amyotrophic lateral sclerosis 1 (1), parkinson disease, late-onset (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.68 RPKM in Muscle - Skeletal
Total median expression: 36.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -262.55711-0.369 Picture PostScript Text
3' UTR -2707.227167-0.378 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003097 - FAD-binding_1
IPR017927 - Fd_Rdtase_FAD-bd
IPR001094 - Flavdoxin
IPR008254 - Flavodoxin/NO_synth
IPR001709 - Flavoprot_Pyr_Nucl_cyt_Rdtase
IPR023173 - NADPH_Cyt_P450_Rdtase_dom3
IPR004030 - NO_synthase_oxygenase_dom
IPR026009 - NOS
IPR012144 - NOS_met
IPR001433 - OxRdtase_FAD/NAD-bd
IPR001478 - PDZ
IPR017938 - Riboflavin_synthase-like_b-brl

Pfam Domains:
PF00175 - Oxidoreductase NAD-binding domain
PF00258 - Flavodoxin
PF00595 - PDZ domain (Also known as DHR or GLGF)
PF00667 - FAD binding domain
PF02898 - Nitric oxide synthase, oxygenase domain

SCOP Domains:
50156 - PDZ domain-like
63380 - Riboflavin synthase domain-like
52218 - Flavoproteins
52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
56512 - Nitric oxide (NO) synthase oxygenase domain

ModBase Predicted Comparative 3D Structure on E9PH30
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK294435 - Homo sapiens cDNA FLJ57045 complete cds, highly similar to Nitric-oxide synthase, brain (EC 1.14.13.39).
EU753241 - Homo sapiens NOS1 mutant mRNA, complete cds.
HV708935 - JP 2012506450-A/33: Methods for treating eye disorders.
JA482064 - Sequence 47 from Patent WO2011072091.
JE980356 - Sequence 47 from Patent EP2862929.
U17327 - Human neuronal nitric oxide synthase (NOS1) mRNA, complete cds.
D16408 - Homo sapiens mRNA for neuronal nitric oxide synthase, complete cds.
L02881 - Human nitric oxide synthase mRNA, complete cds.
U31466 - Human retinal nitric oxide synthase (NOS) mRNA, complete cds.
BC156399 - Synthetic construct Homo sapiens clone IMAGE:100062005, MGC:190140 nitric oxide synthase 1 (neuronal) (NOS1) mRNA, encodes complete protein.
BC172474 - Synthetic construct Homo sapiens clone IMAGE:100069168, MGC:199179 nitric oxide synthase 1 (neuronal) (NOS1) mRNA, encodes complete protein.
AK307481 - Homo sapiens cDNA, FLJ97429.
JD179116 - Sequence 160140 from Patent EP1572962.
JD421512 - Sequence 402536 from Patent EP1572962.
JD514945 - Sequence 495969 from Patent EP1572962.
JD294137 - Sequence 275161 from Patent EP1572962.
JD179115 - Sequence 160139 from Patent EP1572962.
JD199477 - Sequence 180501 from Patent EP1572962.
JD471987 - Sequence 453011 from Patent EP1572962.
BC010126 - Homo sapiens cDNA clone IMAGE:3948082, partial cds.
BC033208 - Homo sapiens nitric oxide synthase 1 (neuronal), mRNA (cDNA clone IMAGE:4903999), partial cds.
JD309291 - Sequence 290315 from Patent EP1572962.
JD361188 - Sequence 342212 from Patent EP1572962.
JD334193 - Sequence 315217 from Patent EP1572962.
JD309925 - Sequence 290949 from Patent EP1572962.
JD177549 - Sequence 158573 from Patent EP1572962.
JD334191 - Sequence 315215 from Patent EP1572962.
JD177547 - Sequence 158571 from Patent EP1572962.
JD199372 - Sequence 180396 from Patent EP1572962.
JD094116 - Sequence 75140 from Patent EP1572962.
JD460122 - Sequence 441146 from Patent EP1572962.
JD541505 - Sequence 522529 from Patent EP1572962.
JD560690 - Sequence 541714 from Patent EP1572962.
JD120559 - Sequence 101583 from Patent EP1572962.
JD379667 - Sequence 360691 from Patent EP1572962.
JD379668 - Sequence 360692 from Patent EP1572962.
JD120558 - Sequence 101582 from Patent EP1572962.
JD513918 - Sequence 494942 from Patent EP1572962.
JD148683 - Sequence 129707 from Patent EP1572962.
JD414809 - Sequence 395833 from Patent EP1572962.
JD123404 - Sequence 104428 from Patent EP1572962.
JD070401 - Sequence 51425 from Patent EP1572962.
JD134309 - Sequence 115333 from Patent EP1572962.
JD524771 - Sequence 505795 from Patent EP1572962.
JD352566 - Sequence 333590 from Patent EP1572962.
JD213393 - Sequence 194417 from Patent EP1572962.
JD213395 - Sequence 194419 from Patent EP1572962.
JD463302 - Sequence 444326 from Patent EP1572962.
JD537799 - Sequence 518823 from Patent EP1572962.
JD253667 - Sequence 234691 from Patent EP1572962.
JD403620 - Sequence 384644 from Patent EP1572962.
JD117544 - Sequence 98568 from Patent EP1572962.
JD354097 - Sequence 335121 from Patent EP1572962.
JD270053 - Sequence 251077 from Patent EP1572962.
JD323585 - Sequence 304609 from Patent EP1572962.
JD482926 - Sequence 463950 from Patent EP1572962.
JD544300 - Sequence 525324 from Patent EP1572962.
JD551184 - Sequence 532208 from Patent EP1572962.
JD535918 - Sequence 516942 from Patent EP1572962.
JD156415 - Sequence 137439 from Patent EP1572962.
JD330222 - Sequence 311246 from Patent EP1572962.
JD047892 - Sequence 28916 from Patent EP1572962.
JD038034 - Sequence 19058 from Patent EP1572962.
JD434722 - Sequence 415746 from Patent EP1572962.
JD305794 - Sequence 286818 from Patent EP1572962.
JD043827 - Sequence 24851 from Patent EP1572962.
JD042590 - Sequence 23614 from Patent EP1572962.
JD266607 - Sequence 247631 from Patent EP1572962.
JD227009 - Sequence 208033 from Patent EP1572962.
JD327681 - Sequence 308705 from Patent EP1572962.
JD163513 - Sequence 144537 from Patent EP1572962.
JD111301 - Sequence 92325 from Patent EP1572962.
JD389485 - Sequence 370509 from Patent EP1572962.
JD516992 - Sequence 498016 from Patent EP1572962.
JD120111 - Sequence 101135 from Patent EP1572962.
JD184915 - Sequence 165939 from Patent EP1572962.
JD284189 - Sequence 265213 from Patent EP1572962.
JD091171 - Sequence 72195 from Patent EP1572962.
JD512248 - Sequence 493272 from Patent EP1572962.
JD465310 - Sequence 446334 from Patent EP1572962.
JD343505 - Sequence 324529 from Patent EP1572962.
JD490110 - Sequence 471134 from Patent EP1572962.
JD391961 - Sequence 372985 from Patent EP1572962.
JD393747 - Sequence 374771 from Patent EP1572962.
JD254394 - Sequence 235418 from Patent EP1572962.
JD521009 - Sequence 502033 from Patent EP1572962.
JD287926 - Sequence 268950 from Patent EP1572962.
AJ004918 - Homo sapiens mRNA for neuronal nitric-oxide synthase isoform mu, partial.
JD285779 - Sequence 266803 from Patent EP1572962.
JD150067 - Sequence 131091 from Patent EP1572962.
JD395183 - Sequence 376207 from Patent EP1572962.
JD063836 - Sequence 44860 from Patent EP1572962.
JD454771 - Sequence 435795 from Patent EP1572962.
AF446135 - Homo sapiens neuronal nitric oxide synthase (NOS1) mRNA, alternative exon 1f.
JD071595 - Sequence 52619 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00330 - Arginine and proline metabolism
hsa01100 - Metabolic pathways
hsa04020 - Calcium signaling pathway
hsa04730 - Long-term depression
hsa05010 - Alzheimer's disease
hsa05014 - Amyotrophic lateral sclerosis (ALS)

BioCyc Knowledge Library
PWY-4983 - citrulline-nitric oxide cycle
PWY-5004 - superpathway of citrulline metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: E9PH30, E9PH30_HUMAN, NM_001204218, NP_001191147
UCSC ID: uc001twn.2
RefSeq Accession: NM_001204218
Protein: E9PH30 CCDS: CCDS41842.1, CCDS55890.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001204218.1
exon count: 30CDS single in 3' UTR: no RNA size: 12291
ORF size: 4407CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 8651.50frame shift in genome: no % Coverage: 99.95
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.