Human Gene DEPTOR (uc003yow.4)
  Description: Homo sapiens DEP domain containing MTOR-interacting protein (DEPTOR), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr8:120,885,900-121,063,157 Size: 177,258 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr8:120,886,087-121,061,943 Size: 175,857 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:120,885,900-121,063,157)mRNA (may differ from genome)Protein (409 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCHPRDLynxMGIneXtProt
OMIMPubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DPTOR_HUMAN
DESCRIPTION: RecName: Full=DEP domain-containing mTOR-interacting protein; AltName: Full=DEP domain-containing protein 6;
FUNCTION: Negative regulator of the mTORC1 and mTORC2 signaling pathways. Inhibits the kinase activity of both complexes.
SUBUNIT: Part of the mammalian target of rapamycin complex 1 (mTORC1) which contains MTOR, MLST8, RPTOR, AKT1S1/PRAS40 and DEPTOR. Part of the mammalian target of rapamycin complex 2 (mTORC2) which contains MTOR, MLST8, PROTOR1, RICTOR, MAPKAP1 and DEPTOR. Interacts (via PDZ domain) with MTOR; interacts with MTOR within both mammalian target of rapamycin complexes mTORC1 and mTORC2.
INTERACTION: P42345:MTOR; NbExp=5; IntAct=EBI-2359040, EBI-359260; P42346:Mtor (xeno); NbExp=2; IntAct=EBI-2359040, EBI-1571489;
INDUCTION: Expression is negatively regulated by both mTORC1 and mTORC2 (at protein level).
PTM: Phosphorylated. Phosphorylation weakens interaction with MTOR within mTORC1 and mTORC2.
SIMILARITY: Contains 2 DEP domains.
SIMILARITY: Contains 1 PDZ (DHR) domain.
SEQUENCE CAUTION: Sequence=BAB14723.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D004997 Ethinyl Estradiol
  • D013749 Tetrachlorodibenzodioxin
  • C006780 bisphenol A
  • C059514 resveratrol
  • C548651 2-(1'H-indolo-3'-carbonyl)thiazole-4-carboxylic acid methyl ester
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D000082 Acetaminophen
  • D016604 Aflatoxin B1
  • D000393 Air Pollutants
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 47.50 RPKM in Muscle - Skeletal
Total median expression: 459.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.80187-0.384 Picture PostScript Text
3' UTR -300.451214-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000591 - DEP_dom
IPR001478 - PDZ
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00610 - Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

SCOP Domains:
46785 - "Winged helix" DNA-binding domain
50156 - PDZ domain-like

ModBase Predicted Comparative 3D Structure on Q8TB45
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologGenome BrowserNo ortholog
    Gene Details 
    Gene Sorter 
  Ensembl WormBase 
  Protein Sequence Protein Sequence 
  Alignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006469 negative regulation of protein kinase activity
GO:0032007 negative regulation of TOR signaling
GO:0035556 intracellular signal transduction
GO:0045792 negative regulation of cell size
GO:2001236 regulation of extrinsic apoptotic signaling pathway

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF385042 - JP 2014500723-A/192545: Polycomb-Associated Non-Coding RNAs.
AK315175 - Homo sapiens cDNA, FLJ96152, highly similar to Homo sapiens DEP domain containing 6 (DEPDC6), mRNA.
AK297822 - Homo sapiens cDNA FLJ52958 complete cds, highly similar to Homo sapiens DEP domain containing 6 (DEPDC6), mRNA.
AK225168 - Homo sapiens mRNA for DEP domain containing 6 variant, clone: CBR02362.
AL136678 - Homo sapiens mRNA; cDNA DKFZp564B1778 (from clone DKFZp564B1778).
AK225675 - Homo sapiens mRNA for DEP domain containing 6 variant, clone: SYN01196.
BC024746 - Homo sapiens DEP domain containing 6, mRNA (cDNA clone MGC:29908 IMAGE:5112749), complete cds.
AK022490 - Homo sapiens cDNA FLJ12428 fis, clone MAMMA1003135.
BC012040 - Homo sapiens DEP domain containing 6, mRNA (cDNA clone MGC:9757 IMAGE:3855457), complete cds.
AM392576 - Synthetic construct Homo sapiens clone IMAGE:100001706 for hypothetical protein (DEPDC6 gene).
AM393333 - Synthetic construct Homo sapiens clone IMAGE:100001708 for hypothetical protein (DEPDC6 gene).
AB527130 - Synthetic construct DNA, clone: pF1KB8664, Homo sapiens DEPDC6 gene for DEP domain containing 6, without stop codon, in Flexi system.
KJ906303 - Synthetic construct Homo sapiens clone ccsbBroadEn_15973 DEPTOR gene, encodes complete protein.
AK023916 - Homo sapiens cDNA FLJ13854 fis, clone THYRO1000952.
MA620619 - JP 2018138019-A/192545: Polycomb-Associated Non-Coding RNAs.
JD103874 - Sequence 84898 from Patent EP1572962.
JD267501 - Sequence 248525 from Patent EP1572962.
JD452343 - Sequence 433367 from Patent EP1572962.
JD387527 - Sequence 368551 from Patent EP1572962.
JD195122 - Sequence 176146 from Patent EP1572962.
JD427561 - Sequence 408585 from Patent EP1572962.
JD313806 - Sequence 294830 from Patent EP1572962.
JD185073 - Sequence 166097 from Patent EP1572962.
JD197508 - Sequence 178532 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RCL9, DEPDC6, DPTOR_HUMAN, NM_022783, NP_073620, Q8TB45, Q96EQ1, Q9H0R7, Q9H894, Q9HA07
UCSC ID: uc003yow.4
RefSeq Accession: NM_022783
Protein: Q8TB45 (aka DPTOR_HUMAN)
CCDS: CCDS6331.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_022783.2
exon count: 9CDS single in 3' UTR: no RNA size: 2631
ORF size: 1230CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2627.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.